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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAACTATTTGAATGACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcacttctatctctggctttcatatacttgtatccgccttagtcttaaggcaactcttattgttttcaatatatacatccgtgtaagaacaaca...

Basic information

species Glycine max
transcript GLYMA07G36390.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36390.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 20
GCACAACTATTTGAATGACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcacttc-tatctctggctttcatatact-tgtatccgccttagtct-taaggcaactcttattgttttcaatatatacatccgtgtaagaacaaca
|||||||||||||||||| |||||||| || |||||||||||||| || || || |||||  | ||||| ||||| |||| | | |||     |||| |  | |||  | || |  ||   ||  |   |||   || |||   |    || |   | |||| |||||  
GCACAACTATTTGAATGATTTGCCTTCATTGGACCCAGAATTATACCGCCACCTTATTTTCTTAAAGgtgatgtctcttcatctttctcctactcatttcttgtgttacagcttctgtgaatactggttctccctttatttcttaagcttaaaaaagggtaa-aacaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409670|gb|EV279478.1|EV279478
EST:     ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAG                         CATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
genomic: ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcac ... tgactaacagCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
EST: gi|7285151|gb|AW597638.1|AW597638
EST:     ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAG                         CATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
genomic: ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcac ... tgactaacagCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
EST: gi|6502408|gb|AW203781.1|AW203781
EST:     ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTNTTCTTAAG                         CATTATAAGGGTGACATTTCGGAGTTGGAACTATACT
genomic: ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcac ... tgactaacagCATTATAAGGGTGACATTTCGGAGTTGGAACTATACT
EST: gi|192326538|gb|FK018470.1|FK018470
EST:     ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAG                         CATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
genomic: ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcac ... tgactaacagCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
EST: gi|19271331|gb|BM887587.1|BM887587
EST:     ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAG                         CATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
genomic: ACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcac ... tgactaacagCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT