Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   		35  
 5'  3'   		36  
 5'  3'   		37  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAACCCTAAAAGAAAGCAATTCAAAAATTTTAGTTGTTTTGGATGACGATCCGACAGGAACACAAACTGTTCATGATATTGAGGTATTAACAGAATGgtaagtttatttcattttctttgattatttctaatttctcggcagaatcaatgcaaatcatgtttcatacagtactatctcaaaccaaagtaccaaagca...

Basic information

species Glycine max
transcript GLYMA07G11610.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G11610.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os06g14740.1 (Oryza sativa), 5'ss of exon 23
TACAAACCCTAAAAGAAAGCAATTCAAAAATTTTAGTTGTTTTGGATGACGATCCGACAGGAACACAAACTGTTCATGATATTGAGGTATTAACAGAATGgtaagtttatttcattttctttgattatttctaatttctcg-gcagaatcaatgcaaatcatgtttcatacagtactatctcaaaccaaagtacca-aagca----------------------------------
|   | |   |    | |  |    ||||||| | || ||||||||||| ||||| || ||||| || || ||||||||||| || || ||||| |||||||||  | | |  ||      ||  |||||  |   | | |   || ||  |    |||    |  | |||  |  ||  |   |  || || |    | ||                                  
TTTCATCTGCATCTCATAATAGCAAAAAAATTCTTGTGGTTTTGGATGATGATCCAACTGGAACCCAGACAGTTCATGATATAGAAGTTTTAACTGAATGgtaaaataaata-atgggagatgtatattttgagcctgtggcatagtattgac-tgaatagattgacgtactttgttactttgtaaaaatgttctgtgaacagtgccataagcctcacttggaaattaaactgcag

upper sequence: GLYMA07G11610.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv17s0000g02140.t01 (Vitis vinifera), 5'ss of exon 21
TACAAACCCTAAAAGAAAGCAATTCAAAAATTTTAGTTGTTTTGGATGACGATCCGACAGGAACACAAACTGTTCATGATATTGAGGTATTAACAGAATGgtaagtttatttcattttctttgattatttctaatttctcggcagaatcaatgcaaatcatgtttcatacagtactatctcaaaccaaagtaccaaagca--
|||  ||  |  |  |||||||||  |||| |||  ||||  ||||||| ||||| || ||||| || ||||||||||||||||| || ||||| ||||||| ||  |  | ||  || |||  ||  | ||  || |  | || |     || | ||  |  || ||          |  ||       ||       |  
TACGTACATTGGATCAAAGCAATTTGAAAACTTTGATTGTCCTGGATGATGATCCAACTGGAACCCAGACTGTTCATGATATTGAAGTTTTAACGGAATGgtgagagtcctgcaacttgtttattttatgct--ttgcaagacaaatggtctgtacatttttatttatttttagtgggcctaatatgctttattgttctaca

upper sequence: GLYMA07G11610.1 (Glycine max), 5'ss of exon 19
lower sequence: EFJ29345 (Selaginella moellendorffii), 5'ss of exon 22
----TACAAACCCTAAAAGAAAGCAATTCAAAAATTTTAGTTGTTTTGGATGACGATCCGACAGGAACACAAACTGTTCATGATATTGAGGTATTAACAGAATGgtaagtttatttcattttctttgattatttctaatttctcggcagaatcaatgcaaatcatgtttcatacagtactatctcaaaccaaagtaccaaagca
    | |||| | | ||  |||      ||||| || | |||||||||||||||||||| || ||||||||||| || || ||| |    ||  | ||||| |||||||       ||| |  ||||||  |   ||  | |||       ||| |    ||  |||||||                                 
GCGATGCAAAACGTGAAGAAAAAG----CAAAAGTTCTTGTTGTTTTGGATGACGATCCTACTGGAACACAAACGGTACACGATGTCACAGTTCTGACAGAGTGgtaagc------catataatttgatcttccatatctcctc-------tcatttgggat--tgtttcag--------------------------------

upper sequence: GLYMA07G11610.1 (Glycine max), 5'ss of exon 19
lower sequence: EFJ12184 (Selaginella moellendorffii), 5'ss of exon 22
----TACAAACCCTAAAAGAAAGCAATTCAAAAATTTTAGTTGTTTTGGATGACGATCCGACAGGAACACAAACTGTTCATGATATTGAGGTATTAACAGAATGgtaagtttatttcattttctttgattatttctaatttctcggcagaatcaatgcaaatcatgtttcatacagtactatctcaaaccaaagtaccaaagca
    |||||| | | || ||||      ||||| || | |||||||||||||||||||| || ||||||||||| || || ||| |    ||  | ||||| |||||||       ||| |  ||||||  |   ||  | |||       ||| |    ||  |||||||                                 
GCCATACAAAACGTGAAGGAAAAG----CAAAAGTTCTTGTTGTTTTGGATGACGATCCTACTGGAACACAAACGGTACACGATGTCACAGTTCTGACAGAGTGgtaagc------catataatttgatcttccatatctcctc-------tcatttgggat--tgtttcag--------------------------------