1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GCTAAACTTCCTACATCGGAGATTGCAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAAgtacgcgtttcttttaatcacatgcacaattactaaatattaactctcatgttggattttgcatgatcacatactactcgttcacttttgtatatcattgatgcctggatggaattatgttacttttttgtttgtttattcag
species | Glycine max |
transcript | GLYMA07G08030.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: CAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAA CTATCCGAAACAAATGGAEST: gi|13125620|gb|BG316190.1|BG316190
genomic: CAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAAgtacgcgttt ... gtttattcagCTATCCGAAACAAATGGA
EST: CANCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAA CTATCCGAAACAAATGGAACTTCTEST: gi|20814252|gb|BQ298730.1|BQ298730
genomic: CAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAAgtacgcgttt ... gtttattcagCTATCCGAAACAAATGGAACTTCT
EST: CAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAA CTATCCGAAACAAATGGAACTTCTTTTGGATATGGATATAATAGAATTACGEST: gi|13479391|gb|BG508734.1|BG508734
genomic: CAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAAgtacgcgttt ... gtttattcagCTATCCGAAACAAATGGAACTTCTTTTGGATATGGATATAATAGAATTACG
EST: CAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAA CTATCCGAAACAAATGGAACTTCTTTTGGATATGGATATAATAGAATTACG
genomic: CAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAAgtacgcgttt ... gtttattcagCTATCCGAAACAAATGGAACTTCTTTTGGATATGGATATAATAGAATTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAAACTTCCTACATCGGAGATTGCAGCGACTATAAATGAATTCAGATCCCGTCATCTGGCTGAGCTCACTGAAgtacgcgtttcttttaatcacatgcacaattactaaatattaactctcatgttggattttgcatgatcacatactactcgttcacttttgtatatcattgatgcctggatggaattatgttacttttttgtttgtttattcag
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