Sequence
atgc intronic sequence ATGC exonic sequenceACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtctaacttttcatgagtttttaaagtttaatttagtttttgaattaatacaatacttgcttaattttta...
Basic information
species | Glycine max |
transcript | GLYMA07G06160.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os07g23990.2 (Oryza sativa), 5'ss of exon 17
ACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtctaacttttcatgagtttttaaagtttaatttagtttttgaattaatacaa--tacttgcttaattttta
| ||||| || | || || ||||| |||||||| |||||||| ||||| ||||||||||| ||||| ||| | | ||||| || || |||||||| ||||| ||| | || || | | | | | || | ||| | || | | | | | | | | | | || | ||
ATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTACTACCGTTTACAACATACAGAACTGGCTCTAAAgtaagtt--gactttatgtttttttttccctgaagatcatctatctatccataagaatgaacatgactatagttcccctttgaggtcttagttgaagtaata
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 19
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 5'ss of exon 19
ACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtctaacttttcatgagtttttaaagtttaatttagtttt---tgaattaatacaatacttgcttaattttta---
| ||||| || | || || |||||||| ||||| |||||||| ||||| ||||||||||| |||||||| || ||||| || || ||||||||||| ||||| |||| || || || | | || | || ||| ||| || |||| || | ||| | | ||| | | || || ||||
ATGAGAGGGAACTTGGACTTGATCATCCAGATACAATGAAGAGTTATGGTGATCTTGCTGTCTTCTATTATAGGCTTCAGCATACAGAGCTGGCTCTCAAgtaagtttagcactcttgattttaaaagaatcgcgaggttagatgg--tttaaatgtttgatgtctctttccatcatctaaacctggatatgattgtttttgttag
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv00s0388g00080.t01 (Vitis vinifera), 5'ss of exon 4
ACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtctaacttttcatgagtttttaaagtttaa--tttagtttttgaattaatacaatacttgcttaattttta
| |||||||| |||| || |||||||| || || |||||||| ||||| ||||||||||| ||||||||| ||||||||||||| || |||||||| ||||||||| | ||||||| ||| | | || || | || | | | || ||| ||| | ||||| | | | | | | ||| ||
ATGAGAGAGAACTAGGACTTGATCATCCAGACACGATGAAGAGTTATGGAGATCTTGCTGTGTTCTATTACGGACTTCAACACACTGAACTGGCTCTCAAgtatgtt--ggtcttgtgtaatgcactattgacttttcatgtattattcataaacatttgtgctttcttgcttgaaatttcagcagtcaagttatattgttt
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 19
ACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtctaacttttcatgagtttttaaagtttaa--tttagtttttgaattaatacaatacttgcttaattttta
| |||||||| |||| || |||||||| || || |||||||| ||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||| | ||||||| ||| | | | || | || | | | || ||| ||| | ||||| | | | | | | ||| ||
ATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTATTACAGACTTCAACACACAGAACTGGCTCTCAAgtatgtt--ggtcttgtgtaatgcactatagacttttcatgtattattcataaacatttgtgctttcttgcttgaaatttcagcagtcaagttatattgttt
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 19
lower sequence: PP1S363_15V6.1 (Physcomitrella patens), 5'ss of exon 14
ACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctctt---gtgcaatatagtgatgtc--taacttttcatgagtttttaaagtttaat-------ttagttt--ttgaattaatac---aatact--tgcttaattttta-----------------
| ||| ||||| | ||||| |||||||| |||||||||||||| ||||||||||| || || || ||||| | |||||||| || || |||| |||||||| || || || || | ||| || | | | || || || || | | || | | ||| ||||| | | | || | ||| |||||||
ATGAGCGAGAGCTTGGTCTAGATCATCCAGATACCATGAAGAGTTATGGGGATCTGGCAGTATTTTATTATCGCCTTCAACATACGGAATTGGCACTGAAgtaagtcctggaaacaaagttaaagtttctgaaatcgttcagtgttgataagattgttctgcgtagtgccgcaatgagtcaagttgaaacagtgtgcaagtattgccgctcaatttttgttgttgttgggatgcag
upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 19
lower sequence: EFJ26734 (Selaginella moellendorffii), 5'ss of exon 18
ACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtctaacttttcatgagtttttaaagtttaatttagtttttgaattaatacaatacttgcttaattttta
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ATGAACGCGAGCTTGGCTTGGACCATCCGGATACCATGAAGAGCTATGGAGATCTGGCTGTCTTTTACTACCGGTTGCAGCATACCGAACTAGCTCTGAAgtacgtt---cttttgtgattctttttaattgatgacctt--aaccttctttacag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9987721|gb|BE661829.1|BE661829EST: GATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAA GTATGTGAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCA
genomic: GATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttg ... ctacaatcagGTATGTGAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtctaacttttcatgagtttttaaagtttaatttagtttttgaattaatacaatacttgcttaattttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT