Sequence
atgc intronic sequence ATGC exonic sequenceGGTATTGCTTCTGAAGTGCAGAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttctctctatcaaatgaatcttcattttttgtgatttctttaacatttggccgaattacattctaaatattcatgtccaaatctatttaatgagtg...
Basic information
species | Glycine max |
transcript | GLYMA07G03890.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 19
GGTATTGCTTCTGAAGTGCAGAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttctctctatcaaatgaatcttcattttttgtgatttctttaacatttggccgaattacattctaaatattcatgtccaaatctatttaatgagtg
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GTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAGTTAGCTATGTCAAATGGAAAGgtacagctactgggtctatcgtttatcttgcatgcgcaatgccgcaatctgcgttgtccttgtacgctgtggttcagccatgacattttcttaattttta
upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 8
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 19
GGTATTGCTTCTGAAGTGCAGAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttct-ctctatcaaa-tgaatcttcattttttgtgatttctttaacatttggccgaattacattctaaatattcatgtccaaatctatttaatgagtg-
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GAAATTGCTGAAGAAGTACAGAGCGAGTCTAAATGGAAGCAGTTAGGAGAGTTAGCCATGTCCTCGGGGAAGgtacatcttctctataaaaatgttgcccaatgatttgtagtggaa--aatagaaaaataactttctttgcaaatgct-atatatcagtcagtttactacttta
upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 19
GGTATTGCTTCTGAAGTGCAGAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttctctctatcaa--atgaatctt-cattttttgtgatt--tctttaacatttggccgaattacattctaaatattcatgtccaaatctatttaatgagtg
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GACATTGCTACAGAAGTGCAAAGTGAGTCAAAATGGAAGCAATTGGGAGAATTAGCTATGTCCACTGGAAAGgtatt-ctgtttaccaagaatggatctttcgttatctgagaaaagtgcccatcagtaccaatgctagcagtgtggattctctttctgggaaagacaagttt----
upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 19
GGTATTGCTTCTGAAGTGCAGAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttctctctatcaaatgaatcttcattttttgtgatttctttaacatttggccgaattacattctaaatattcatgtccaaatctatttaatgagtg----
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GAAATAGCTTCAGAAGTACAGAGTGAAACCAAATGGAAGCAGTTGGGAGAATTAGCTATGTCCAATGGAAAGgt-tttttggctaccat-taattgtttactgacagttaattgctggatgagcagccc--tcattcatcacacatgcatgcaaatccttggtgaaatggcagtgt
upper sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 19
GGTATTGCTTCTGAAGTGCAGAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttctctctatcaaatgaatcttcattt-tttgtgatttctttaacatttggccgaattacattctaaata--ttcatgtccaaa-------tctatttaatgagtg----------------
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GCTATTGCTGAGGAATCACATAGTGAGTCCAAGTGGAAGCAACTGGGAGAATTGGCAATGTCAGCTGGAAAGgtataggtctgtttgaagcagatgcgtgtgtgtttttcaaagctctaacatacatctagagtaatgtccatgctctttcatttgcacacgttgatttcattcggtgcatggcatgtgtttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208332645|gb|GE129050.1|GE129050EST: AAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAG TTAGAAATGGCCGAAGAGTGTTTAAAACAAGCAATGGATTTGAGTGGGTTA
genomic: AAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttctct ... gttcttgcagTTAGAAATGGCTGAAGAGTGTTTAAAACACGCAACAGATTTGAGTGGGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTATTGCTTCTGAAGTGCAGAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttctctctatcaaatgaatcttcattttttgtgatttctttaacatttggccgaattacattctaaatattcatgtccaaatctatttaatgagtg
- - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA