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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACCCAGCAACATGGATGCTAGAAGTGAGTTCTGTAGCAGCTGAAGTTCGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaagtaacaattagaatgcctacattgttaaatgggtttgcatgattttgttggtttgagctaacacgtatgcttatcaaacag

Basic information

species Glycine max
transcript GLYMA07G01860.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 17
ACAACCCAGCAACATGGATGCTAGAAGTGAGTTCTGTAGCAGCTGAAGTTCGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaagtaacaattaga-atgcctacattgttaaatgggtttgcatgattttgttggtttgagctaacacgtatgcttat-caaacag
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ATAACCCAGCAACATGGATGCTGGAAGTGAGCTCAATTGCTGCTGAGATTAGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaaacatattactatatatcaaaattcttc--tgagatggtgaagttttgg-gctttgagctgacatatatggctatatgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14009025|gb|BG725629.1|BG725629
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaag ... tatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
EST: gi|10231389|gb|BE800277.1|BE800277
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaag ... tatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
EST: gi|21888177|gb|BQ741390.1|BQ741390
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaag ... tatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
EST: gi|9564838|gb|BE474347.1|BE474347
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaag ... tatcaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC