Sequence
atgc intronic sequence ATGC exonic sequenceGTACTGTGGTAGATTCTAAGATCTGTCATCCTTCGGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAGgtatgatcagtggtggacctattcatgaatgagggtgggcagtgcaccccctcattttaataaagtcatatttatttatcttaaaattttatattttgca...
Basic information
species | Glycine max |
transcript | GLYMA06G23920.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 19
lower sequence: PP1S173_134V6.1 (Physcomitrella patens), 5'ss of exon 17
GTACTGTGGTAGATTCTAAGATCTGTCATCCTTCGGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAGgtatga--tcagtggtggacctatt--catgaatgagggtgggcagtgcaccccctcattttaataaagtcatatttatttatctta-aaattttatattttgca------------------------------------------------------
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GTACGGTTGTGGACTCTACAATCTGTCACCCTACGGAATTCGACTTCTATCTTTGCAGTCACGCTGGAATTCAGgtctgaaacccttcctaccacttttagcatttaccaacgttgtgatggtatccaggtgcgatgctggcgtcttgtttccttgcattataaaccttgtttaatgtgttgtgggcacaactaatttgtttagtcttgttcatgttgtatgggtgactccag
upper sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 19
lower sequence: EFJ15357 (Selaginella moellendorffii), 5'ss of exon 20
GTACTGTGGTAGATTCTAAGATCTGTCATCCTTCGGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAGgtatgat--cagtg-gtggacctattcatgaatgagggtgggcagtgcaccccctcattttaataaagtcatatttatttatcttaaaattttatattttgca
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GTACTGTGGTGGATACGAAGATCTGTCATCCCACGGAATTTGATTTCTACCTCTGCAGTCACGCTGGAATACAGgtacgaaggcacagcgttaacctgattgaggctgatggtcgtgactgcgaccctacag---------------------------------------------
upper sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 19
lower sequence: EFJ24991 (Selaginella moellendorffii), 5'ss of exon 20
GTACTGTGGTAGATTCTAAGATCTGTCATCCTTCGGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAGgtatgat--cagtg-gtggacctattcatgaatgagggtgggcagtgcaccccctcattttaataaagtcatatttatttatcttaaaattttatattttgca
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GTACTGTGGTGGATACGAAGATCTGTCATCCCACGGAATTTGATTTCTACCTCTGCAGTCACGCTGGAATACAGgtacgaaggcacagcgtcaacctgattgaggctgatggttgtgactgcgaccctgcag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208092068|gb|GD890967.1|GD890967EST: GTCATCCTTCGGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAG GGTACAAGTAGACCAGACACACTATCACGTCCTCT
genomic: GTCATCCTTCGGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAGgtatgatcag ... cattttacagGGTACAAGTAGACCAG-CACACTATCACGTCCTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTGTGGTAGATTCTAAGATCTGTCATCCTTCGGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAGgtatgatcagtggtggacctattcatgaatgagggtgggcagtgcaccccctcattttaataaagtcatatttatttatcttaaaattttatattttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccccc