1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TTGTGGAGTACACTCTTTTCCCTGAACTTGAGAAGGCAGCTGAAATTACACCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctgtcccgccctccatctctattaaaagtttacaaggcacatattctaccctaatatagaatggtatagataatacaacagtgattgctggtacaatgatgatttttcatctcaaatccaagttacttgcatgggacctgttaccaagcttggaactgatctcaatttgtttgattgaatgcag
species | Glycine max |
transcript | GLYMA05G37800.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTEST: gi|51343030|gb|CO983763.1|CO983763
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTEST: gi|7286120|gb|AW598607.1|AW598607
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTEST: gi|22927785|gb|BU544924.1|BU544924
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTEST: gi|208104987|gb|GD904124.1|GD904124
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: GCTGAGAGCACAGAAAA GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTEST: gi|193338576|gb|FK304749.1|FK304749
genomic: GCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: CCAATGAAGGACACCGCAACCGACAACCTTCCAGCTGAGAGCACAGAAAA GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGTEST: gi|51338374|gb|CO982240.1|CO982240
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
EST: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAA GCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
genomic: CCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctg ... ttgaatgcagGCCTATTATGCCATCCAAAATTCCCAAAGCTTCTCAAGTCCCACAAAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGGAGTACACTCTTTTCCCTGAACTTGAGAAGGCAGCTGAAATTACACCAATGAAGGACACCACAACCGACAACCTTCCAGCTGAGAGCACAGAAAAgtgagttctgtcccgccctccatctctattaaaagtttacaaggcacatattctaccctaatatagaatggtatagataatacaacagtgattgctggtacaatgatgatttttcatctcaaatccaagttacttgcatgggacctgttaccaagcttggaactgatctcaatttgtttgattgaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA