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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAAgtgagtagcttgtataattgaaaattgacacacttttaactgattcaatattttaggacttggagatccaaattcatgataaaactttgcattagctgca...

Basic information

species Glycine max
transcript GLYMA05G08040.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08040.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv11s0016g04420.t01 (Vitis vinifera), 5'ss of exon 19
TAGGGTGGCAAGGTGGAAGCATTTTAGCTCTTGAGACTCTAAAACGTGTTGTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAAgtgagtagcttgtataattgaaaattgacacacttttaactgattcaatattttaggacttggagatccaaattcatgataaaactttgcattagctgca------
| || |||||||||||||||||  |||||||||| || || ||||||||||||||||| ||||| ||||| |||||||| |||||||| || || ||||||||||| |||| |||| |  | |  | ||| | | | |  |  ||   | |||   |   ||  | |   ||||      ||| |  ||    || ||||      
TCGGATGGCAAGGTGGAAGCATACTAGCTCTTGAAACACTGAAACGTGTTGTGGTTGCTGGAAATCGAGCTAGGGATGCACTTGTTGCCCAAGGGCTTAAgtgagtggcttttatagt--atagataacatattctgagttttttatgtttttattggggtgtggttttcaattt---gcaaatccatgt-ccaggtgcatgtcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7028948|gb|AW458731.1|AW458731
EST:     GTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAA                         AGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
genomic: GTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAAgtgagtagct ... aacaatgcagAGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
EST: gi|151401335|gb|EV271149.1|EV271149
EST:     CAGGGATGCTCTTGTTGCGCAGGGACTTAA                         AGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
genomic: CAGGGATGCTCTTGTTGCGCAGGGACTTAAgtgagtagct ... aacaatgcagAGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
EST: gi|120532666|gb|EH260799.1|EH260799
EST:     TGTTGCGCAGGGACTTAA                         AGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
genomic: TGTTGCGCAGGGACTTAAgtgagtagct ... aacaatgcagAGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
EST: gi|10252608|gb|BE820374.1|BE820374
EST:     GTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAA                         AGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
genomic: GTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAAgtgagtagct ... aacaatgcagAGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
EST: gi|15000966|gb|BI321780.1|BI321780
EST:     GTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAA                         AGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG
genomic: GTGGTTGCAGGAAACCGAGCCAGGGATGCTCTTGTTGCGCAGGGACTTAAgtgagtagct ... aacaatgcagAGTTGGTCTTGTTGAAGTTCTTCTTGGTCTTCTTGATTGGAGGGCTGGCGG