Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATGTGTAGAACAACCTGGTGTACATGAATTTAGTTTTGTTGACTCATGTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATACATCTGATCAATTGgtatggagaatactgacatccatgattatatttttcagtttcttcatgtattatcatatttggttcttttgaggatcttcttccgtaattttttcttttttgtag

Basic information

species Glycine max
transcript GLYMA03G37930.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37930.2 (Glycine max), 5'ss of exon 19
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 18
TATATGTGTAGAACAACCTGGTGTACATGAATTTAGTTTTGTTGACTCATGTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATACATCTGATCAATTGgtatggagaatactgacatccatgattatatttttcagtttcttcatgtattatcatatttggttcttttgaggatcttcttccgtaattttttcttttttgtag
||| |||||||||   ||||| ||||||||| |    ||||||||||||||||| ||||||||||| || ||  |||| ||| ||||||| |||  |||||||     || ||| | ||    | || | ||| |||       |||| || ||    |||   | | ||    || || |  | |  |||| |           
TATTTGTGTAGAATCTCCTGGAGTACATGAACTCCACTTTGTTGACTCATGTATTTTCTTTGGGAGCTCGTCGATGAAGATTGATACATCAGATACATTGgtac----aacacttatata---gtttttctttctca----tggcatggatcatttccttttcctttattctc-atattttcacattgttttatag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491323|gb|EH219490.1|EH219490
EST:     GTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATACATCTGATCAATTG                         CCCATCCATCTAATAGGAGAGAAGTATCTTCTTAATGGACAAATAAATGTG
genomic: GTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATACATCTGATCAATTGgtatggagaa ... ttttttgtagCCCATCCATCTAATAGGAGAGAAGTATCTTCTTAATGGACAAATAAATGTG
EST: gi|16348153|gb|BI973748.1|BI973748
EST:     GTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATACATCTGATCAATTG                         CCCATCCATCTAATAGGAGAGAAGTATCTTCTTAATGGACAAATAAATGTG
genomic: GTATCTTCTTTGGGAGTTCATCAGTGAAAATTAATACATCTGATCAATTGgtatggagaa ... ttttttgtagCCCATCCATCTAATAGGAGAGAAGTATCTTCTTAATGGACAAATAAATGTG