Sequence
atgc intronic sequence ATGC exonic sequenceATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAGgtaaaatagcgtggaatctcattatcaaatctttttcccttaaataaatatatatgtttttgtaatttaagaagtactaaaaacatgtcatttgaagcag
Basic information
species | Glycine max |
transcript | GLYMA03G34860.2 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G34860.2 (Glycine max), 5'ss of exon 19
lower sequence: Vv08s0007g03920.t01 (Vitis vinifera), 5'ss of exon 16
ATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAGgtaaaatagcgtggaatctcattatcaaatctttttcccttaaataaatatatatgtttttgtaatttaagaagtactaaaaacatgtcatttgaagcag
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ATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAGgtaaaa-----tccaattcc--tattgagc-----tcccttacattcttttatgcacttcaa------aaaaatttatttcaggttatattcctatgcag
upper sequence: GLYMA03G34860.2 (Glycine max), 5'ss of exon 19
lower sequence: EFJ08215 (Selaginella moellendorffii), 5'ss of exon 12
ATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAGgtaaaatagcgtggaatctcattatcaaatctttttcccttaaataaatatatatgtttttgtaatttaagaagtactaaaaacatgtcatttgaagcag
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ATTCCATGTCGAACGGCAATGCGTGGAAGTTTTCCTTTAAATGGCACCTATTTCCAAGTGAACGAGgtaatattccattgc-tcctttcacttaatatttgactctcttgctcgtgtgtag---------------------------------------------
upper sequence: GLYMA03G34860.2 (Glycine max), 5'ss of exon 19
lower sequence: EFJ12207 (Selaginella moellendorffii), 5'ss of exon 12
ATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAGgtaaaatagcgtggaatctcattatcaaatctttttcccttaaataaatatatatgtttttgtaatttaagaagtactaaaaacatgtcatttgaagcag
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ATTCCATGTCGAACGGCAATGCGTGGAAGTTTTCCTTTAAATGGCACCTATTTCCAAGTGAACGAGgtaatcttccattgc-tcctttcacttaatatttgactcttttgctcgtgtgtag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193731627|gb|FK665397.1|FK665397EST: CTATGAGAGGGAGCTTTCCGCTAAATGGCGCCTATTTTCAAGTCAACGAG GTCTTTGCAGACAATGACTCAAGCCTTAACCCAATTAGTGTTCCCCGAAGT
genomic: CTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAGgtaaaatagc ... tttgaagcagGTCTTTGCAGACAATGACTCAAGTCTTAACCCAATTAGTGTTCCCCGAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAGgtaaaatagcgtggaatctcattatcaaatctttttcccttaaataaatatatatgtttttgtaatttaagaagtactaaaaacatgtcatttgaagcag
- - - - - - - - - - GAGAGG
- - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - GAGCTT