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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGAGTTCTTTGGAACTCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatattttttacaattatatttttttgggtttttttataatttctataaaagaatcttactagtacattatttgcag

Basic information

species Glycine max
transcript GLYMA02G39360.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 19
AGTTGAGTTCTTTGGAACTCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatattttttacaattatatttttttgggtttttttataatttctataaaagaatcttactagtacattatttgcag
 |||||||||||||| |||||||||| ||| |||||  | ||||||||||| || ||| | |||||||| || || || || ||||||||  |||| |||||| | |  ||         | |  || |||  || ||      ||||||   | | | |    |||| | |  |||| ||  | | | | |  || ||   | |            
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtatt-tgcta--------catttagtttaaccttccc------ttttttgtcact-tctcacattggttctgattattat--cgaaacatgtgtcatatctgcag-----------

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 19
AGTTGAGTTCTTTGGAACTCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatattttttacaattat----atttttttgggtttttttataatttctataaaagaatcttactagtacattatttgcag
 |||||||||||||| |||||||||| ||| |||||  | ||||||||||| || ||| | |||||||| || || || || ||||||||  |||| |||||| | |      | || ||  | |   |    |||   ||  | || | ||| |  |    ||| || | |     | | | || |||  |                             
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtatttttgctacgtttagt--ttgaccttcccttttt-tgtcacttctcacattggttctgattattatcgaaacatgtgtcatatctgcag----------------------------

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 17
AGTTGAGTTCTTTGGAACTCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatattttttacaattatatttttttgggtttttttataatttctataaaagaatcttactagtacattatttgcag
 |||||||||||||| || |||||||  || ||||| |||||||||||||| || ||| ||||||| || || ||||| || ||||| ||  |||||||||||   ||||    | |    ||    ||  |  |||||   || |  || |  |    | ||   |      | ||||| || | | |||    | |  | | ||||   | |   
TGTTGAGTTCTTTGGCACCCTTTCAAGGGAGTGGGCACTAGAGTGCATGAAGGACCTTCTACTGGTAAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtaa-atattgctccgttcctgtaaacatttttgttccaccctactgctttccctcccctgttcaag------tatataacttttgtcaaa----cctg-tggcacatctgtag---

upper sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
AGTTGAGTTCTTTGGAACTCTTTCAAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTCAACCTTAGGGGCAACCTTCAAATAATTGTGCAGgtactgtattagggcttggtagtcggtataatgtttccatgatattttttacaattatatttttttgggtttttttataatttctataaaagaatcttactagtacattatttgcag
 ||||||||||||||||||||||||| ||||||||| || ||||| |||||||| ||| |||| ||||| ||| | | ||| ||||| |||||||||||||||    | ||| | || |||   |  || ||       |||| | ||  ||| | |||     ||| |  |   ||     | | |  |                           
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaa---aatagtgttttgtatatgtgattat-------tgat-tattccacattcataaaaaattgtggctcactaagtcatttgtgcag--------------------------