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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAATAAATGATGCTACCTTAAAATCATTGGACTTTCGAAGGGACTTTTTATTCCCACTTTCTCTACTATTGTGCAATACTAGACCTGTTGGTCGTCAGgtagttaaattattttaggtgcttcacctctccacagctatatattgaacattgtctaataaatgacatctttgtttcag

Basic information

species Glycine max
transcript GLYMA01G41140.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41140.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 19
CCTAATAAATGATGCTACCTTAAAATCATTGGACTTTCGAAGGGACTTTTTATTCCCACTTTCTCTACTATTGTGCAATACTAGACCTGTTGGTCGTCAGgtagttaaattattttaggtgcttcacctctccacagctatatattgaacattgt-ctaataaatgacatctttgtttcag-------------------------------------------------------------------------------------------
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TCTAATAAATGATGCTACTTTGAAATCTTTGGATTTTAGAAGGGACTTTCTCTTTCCATTTTCTCTCTTATTGCACAATACAGGACCTGTTGGACGTCAGgtacttagatgatgttttctacttacatgtggtgcctcttaagcaagattatgattcttacaactctcctcccaccaaaaaataaataagggaaaggaaaacagggaagagagagtaagataattattggattattattcaacatctcatatttggatattttgtgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336659|gb|CO980525.1|CO980525
EST:     TATTCCCACTTTCTCTACTATTGTGCAATACTAGACCTGTTGGTCGTCAG                         GACACTGTACAGTTGCTGATTACTTTGATGCTTTTAGCAGATCTTTCTGTC
genomic: TATTCCCACTTTCTCTACTATTGTGCAATACTAGACCTGTTGGTCGTCAGgtagttaaat ... tttgtttcagGACACTGTACAGTTGCTGATTACTTTGATGCTTTTAGCAGATCTTTCTGTC