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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACGgtatggacttatttatggttaaattatttatataacttgttacagctgttaatttttcacacaattttaattaaattacactattcatgtatggttgaat...

Basic information

species Glycine max
transcript GLYMA01G29470.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 19
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 18
TCACATTGGATTGGTAAGGAGTACTACAAGAGTGGGCCACGCGGAAATGACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACGgtatggacttatttatggttaaattatttatataacttgttaca-gctgttaatttttcacacaattttaattaaattacactattcatgtatggttgaat--
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TCACACTGGATTGGCCAAGAATATTACAAGAGGGGACCAGATGGAAATGATATTCGCAAGACAAATGTGCCTCATATCCGGGTGGAATTCCGTGAAACGgtatgggtttgattccgtct---tttctcaagcgttgctatatatgcttttcagctttcatgctttaacatttttttaaggccttgtctggatctcagaaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26267857|gb|CA818920.1|CA818920
EST:     ACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACG                         ATTTGGAGAGAGGAGATGCAACAGGTTTATTTGGGCAAAGCCATCATTCCT
genomic: ACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACGgtatggactt ... tgttttgcagATTTGGAGAGAGGAGATGCAACAGGTTTATTTGGGCAAAGCCATCATTCCT
EST: gi|22928940|gb|BU546079.1|BU546079
EST:     ACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACG                         ATTTGGAGAGAGGAGATGCAACAGGTTTATTTGGGCAAAGCCATCATTCCT
genomic: ACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACGgtatggactt ... tgttttgcagATTTGGAGAGAGGAGATGCAACAGGTTTATTTGGGCAAAGCCATCATTCCT
EST: gi|254332341|gb|GR846386.1|GR846386
EST:     ACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACG                         ATTTGGAGAGAGGAGATGCAACAGGTTTATTTGGGCAAAGCCATCATTCCT
genomic: ACATTCAGAGAACAAACGTTCCTCACATCCGGTTGGAATTCCGTGATACGgtatggactt ... tgttttgcagATTTGGAGAGAGGAGATGCAACAGGTTTATTTGGGCAAAGCCATCATTCCT