Sequence
atgc intronic sequence ATGC exonic sequenceGTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGgtattatactcattatgtagatagattttttttatgataagctattatgtagacataattaaagagtgaattctgttttttgaaaatccatatgacagat...
Basic information
species | Glycine max |
transcript | GLYMA20G37100.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G37100.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os10g31970.1 (Oryza sativa), 5'ss of exon 14
GTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGgtattatactca---ttatgtagatagattttttttatgataagctattatgtagacataattaaagagtgaattctgttttttgaaaatccatatgacagat
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GTGGGAAAATGTGATCCAATCTGTCAAGAAGGTCAAATCTGGGGATAAAGGTTTTGGTTGCATTTTGGCTCACAACATGGGCCTTGGGAAAACTTTTCAGgt-ttgtactgacttttgtcctgtaatatatattcttgatttcttcattacat-gattcagccatattatcatattttttccatggttatt-agatcatattc
upper sequence: GLYMA20G37100.1 (Glycine max), 5'ss of exon 18
lower sequence: AT1G08600.2 (Arabidopsis thaliana), 5'ss of exon 16
GTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGgtattatactcattatgtagatagattttttttatgataagctattatgtagacataattaaagagtgaattctgttttttgaaaatc--catatgacagat---------------------------------------
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GTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGGGCCTGGGCAAAACTTTTCAGgtgcttaattcttttcatgcacgaggctgttt--ggatatatcgtattatcgtccgattctattagtgcatactactaatggttaatcgttatttgttaattactggctctttatgtcttctctcacttaaacctattcag
upper sequence: GLYMA20G37100.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv14s0036g01460.t01 (Vitis vinifera), 5'ss of exon 13
GTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGgtattatactcattatgtagatagattttttttatgataagctattatgtagacataattaaagagtgaattctgttttttgaaaatccatatgacagat-------
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GTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGGGGCTTGGTAAAACTTTTCAGgtattgcgttcgtttctctcaatcattcctttttctct------tcatg-agaagttcttagagaataaaaatggcttatcaaacttgtacatgtgcaatgcctgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208084601|gb|GD879763.1|GD879763EST: GTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAG GTGATAGCTTTTTTGTACACTGCAATGAG
genomic: GTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGgtattatact ... ggaactttagGTGATAGCTTTTTTGTACACTGCAATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGgtattatactcattatgtagatagattttttttatgataagctattatgtagacataattaaagagtgaattctgttttttgaaaatccatatgacagat
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