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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAGgtcaggatcactttctctcattatacacttgttttcttattatgtcaaagatatgttctgagaagttatatctgtgtag

Basic information

species Glycine max
transcript GLYMA20G28970.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 17
GGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAGgtcaggatcactttctctcattatacacttgttttcttattatgtcaaagatatgttctgagaagttatatctgtgtag
||| ||||| |||||||| ||||| ||||||||| | || |||||||||||||| || || ||||| ||   || ||    |   | ||| |   | || |    |  | |      ||  ||||  |  | | |   | |||
GGATGGTGTCAGTGAAGGCCAATTCTACCAAGTTCTCCTCTATGAGTTGGATGCTATCCGCAAGgttagatgcatttgtattttctttactcagatattttgtccactttattaggttgc-ctgacgaaatgttttcttttag

upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
GGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAGgtcaggatcactttctctcattatacacttgttttcttattatgtcaaagatatgttctgagaagttatatctgtgtag------------
 || || ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| |  |    ||   |  |  ||  | |   |     |  | || |   | |  || |    | |   |   | ||              
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgtaaaaact-tttgtgcatagcatgaaatgaatccgccacaaagttagcaaaacattttacataatcggaaacgggtttgtgtttgtttag

upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 15
GGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAGgtcaggatca-ctttctctcattatacacttgttttctta--------ttatgtcaaag-------------atatgttctgagaagttatatctgtgtag
||| ||||| ||||||||||||||||| |||||  ||||||||||  | ||||| || ||||| || ||  ||| |||| | |  ||||    |   ||  |||        | || | |||              ||| || || | || | || |||    ||
GGATGGTGTTAGTGAAGGGCAATTTTATCAAGTGCTACTTTATGAACTAGATGCAATCCGGAAAgtgagtttcagctttttattcttattttttccattctttaattaaaaatcatttgaaaccaaatagcaacccataggtccttataaataatttctacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205882|gb|BU965135.1|BU965135
EST:     AAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAG                         GCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACATTCATAGTT
genomic: AAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAGgtcaggatca ... atctgtgtagGCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACATTCATAGTT
EST: gi|19347375|gb|BM892255.1|BM892255
EST:     AAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAG                         GCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACATTCATAGTT
genomic: AAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAGgtcaggatca ... atctgtgtagGCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACATTCATAGTT