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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACATCTATAGCACATgtacggatatctgtttttccaacagactatatgttaatatatgcatggaatttgggggcaatgatctatataatttgaaatttttgtatggactgtaactgtacatcatatctattttcttgctcctgatggtgttccatttgatacag

Basic information

species Glycine max
transcript GLYMA20G24040.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACATCTATAGCACATgtacggatatctgtttttccaacagac-tatatgttaatatatgcatggaatttggg-ggcaatgatctatataatttgaaatttttgtatggactgtaactgtacatcatatctattttcttgctcctgatggtgttccatttgatacag
 || ||  | ||||| || || ||   |||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||| |||| |   | |   | |     |  | | ||||||  | | || ||  |  ||    || ||| ||||||  ||    |  ||   ||| |   ||    |                                                 
AGATATATTTATGCCGCCTTTGATCACGAAGTGGCAGCAACTTTCCAATTCTGACAAAGATCTATTTCCACTCCTTGAATGCTTTACATCTATTGCACAGgtactgtggttttaatctgtggaaatcatctatgttttt-tctgaatataccttatctggaaatcatctattgaaac--agtttggagtaggagttgctttta------------------------------------------------

upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 18
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACATCTATAGCACATgtacggatatctgtttttccaacagactatatgttaatatatgcatggaatttgggggcaatgatctatataatttgaaatttttgtatggactgtaa-ctgt-acatcatatctattttcttgctcctgatggtgttccatttgatacag
||| ||||| ||||| ||| |  |||  |||||||| ||||||||||||||||| |||||||| |||||  | || || ||||||||||| ||  | || ||| ||    ||  || || |   |    ||    |  ||||  ||    | | |   || |    |  |  | |  || | |   ||  ||   ||  |||| | || |||                                       
TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatggg---ctacttgtcaa---ggtctta----agaatatctataaggtcttgatacagt----tgaacgaatgaaactatccttaatgatcctactctgtgaaattatagt-------------------------------------

upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv18s0001g00910.t01 (Vitis vinifera), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACATCTATAGCACATgtacggatatctgtttttccaacagactatatgttaatatatgcatggaatttgggggcaatgatctatataatttgaaatttttgtatggactgtaactgtacatcatatctattttcttgctcctgatggtgttccatttgatacag
||| ||||| ||||| ||||||||||  |||||||||| | |||| |||||||||||||| || ||||| || || || |||||||||||||||||||| ||| |  | |   ||||   || ||       |  | ||| || |   | | | |    ||    ||||||||| ||| ||  |  |||   || | | |  |    | |                                       
TGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACATCTATAGCACAGgtatgc-tgtactttttgttaatag-------gacagtat-tgtacttagtcttgtt-taacacactatataatctgatatgatattatattctttcaattgaggaaaaa---------------------------------------

upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACATCTATAGCACATgtacggatatctgtttttccaacagactatatgttaatatatgcatggaatttgggggcaatgatctatataatttgaaatttttgtatggactgtaactgtacatcatatctattttcttgctcctgatggtgttccatttgatacag
||| ||||| ||||| ||||| || |  ||||||||||||||||| |||||||| |||||  |||| || || ||||| |||||||||||||||||||| |||   |   | || ||       |||  || | ||   |||   |    |   ||  |  || |||| ||||| |  || ||  ||||  ||| | |   | |                                             
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttctt--ttgaccttaagctatgttatttgtttgttcaaggaactttg-tctacataatatataaattg-gtat--actatgatcatgcca-------------------------------------------