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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTTTTGAATGACAGAGATTCAAGGgtggcatattattcttctgcttttcttctgaaggcatgaatttgatttcattttttgtgttgatcatgtgtattggtccataaatttcatcctttgtaacgatttccctttactgcag

Basic information

species Glycine max
transcript GLYMA20G23240.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23240.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G459642_T04 (Zea mays), 5'ss of exon 3
GGAACTTTTGAATGACAGAGATTCAAGGgtggcatattattcttctgcttttcttctgaaggcatgaatttgatttcattttttgtgttgatcatgtgtattggtccataaatttcatcctttgtaacgatttccctttactgcag
||  ||| || |||||| |||||||||||| ||||| |||||| | ||||||||| |||||| ||||  ||||    |||  |  |     ||||   |  | || |       |  | | ||   || |  |   || || |   
GGGTCTTCTGGATGACACAGATTCAAGGGTAGCATACTATTCTGCCGCTTTTCTTTTGAAGgtatga--ttgaagcaattgctgat-----tcattgctgatagttctactccattttgccttaacacaacctgtgttaacag---

upper sequence: GLYMA20G23240.1 (Glycine max), 5'ss of exon 18
lower sequence: AT3G12590.1 (Arabidopsis thaliana), 5'ss of exon 15
GGAACTTTTGAATGACAGAGATTCAAGGgtggcatattattcttctgcttttcttctgaaggcatgaa-----tttgatttcattttttgtgttgatcatgtgtattggtccataaatttcatcctttgtaacgatttccc-tttactgcag-------------------
||||||  || |||| |  |||||||||||||| ||||| ||||| || ||||||||||||||| ||      ||  | ||||   |||   ||    |     ||   |  |  |||   |   ||   ||   |||     | || |                      
GGAACTCCTGGATGATACTGATTCAAGGGTGGCTTATTACTCTTCAGCATTTCTTCTGAAGgcaagaggatttttcaaattcaccattttgattttggaaagacatcattgaaagaataataagtttccaaatattttttggctcaccggttaaaatttggattatttcag

upper sequence: GLYMA20G23240.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv13s0019g00680.t01 (Vitis vinifera), 5'ss of exon 15
GGAACTTTTGAATGACAGAGATTCAAGGgtggcatattattcttctgcttttcttctgaaggcatgaatttgatttcattttt----tgtgttgatcatgtg--tattggtcca--taaatttcatcctttgtaacgatttccctttactgcag----------
|||||||||  | ||    ||||||||||| |||||||| || || ||||||||| |||||||| |||    |||   | ||     ||     |   ||    | ||  ||||  |  || | |   |||| ||  | |  |||  | |   |          
GGAACTTTTAGAAGATGCTGATTCAAGGGTAGCATATTACTCGTCAGCTTTTCTTTTGAAGgcaagaacactattctttcttcccactgcaccaaggttgcaactgtttatccagtttgatgttagtttttgcaa--actgacctggagtttggcattttgcag