Sequence
atgc intronic sequence ATGC exonic sequenceCTGCTTAACAGTTTTGATAATCATGATTTTCCCGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttctctactgtttaatattattcattttattctcgaattattgtaagagtatttaatattagcgactcttatgatgcag
Basic information
species | Glycine max |
transcript | GLYMA18G44210.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 18
CTGCTTAACAGTTTTGATAATCATGATTTTCCCGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttctctactgtttaatattattcattttattctcgaattattgtaagagtat--ttaatattagcgact-cttatgatgcag-------------------------
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------------------------------------AAAGGAATTTCAAATCTCTGCCTTGTCAATGAACTTGATGACTCTCTGCTACTTGTTGCCTCTTGTAATGTTCCAACTCTTTCCAGAGCGTC--TTTTGCAAgttagttattgattgagtatggctgttaaaagctcttacttgtggttctgaaatctcatgtaggcgatggatcag
upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 18
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 18
CTGCTTAACAGTTTTGATAATCATGATTTTCCCGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttctctactgtttaatattattcattt---tattctcgaatt-attg--taagagtatttaatattagcgactct-tatgatgcag-------------------
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CTTCTCAATGGCTTTGACAATCATGATTTTCCTGACAAAGGAATTTCAAAGCTCTGCCTCATCAATGAACTTGACGACTCTCTGCTACTTGTTGCATCATgtaatgttcacaactcttgccaccaagtctttcagatgtttgcaagttgattgaatatgggtgttgagtaatggtatctatgtcttacacatgcttttgggatttgggtag
upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 18
CTGCTTAACAGTTTTGATAATCATGATTTTCCCGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttc---tctactgttta-atattattcattttattctcgaatta-ttgtaagagtatttaatattagcgactcttatgatgcag------------------
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CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9901076|gb|BE610044.1|BE610044EST: GCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCAT CTGATGGAAACATTCGGATTTGGAAGGACTATACTCTTAAGGGTAAACAAA
genomic: GCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttct ... tatgatgcagCTGATGGAAACATTCGGATTTGGAAGGACTATACTCTTAAGGGTAAACAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCTTAACAGTTTTGATAATCATGATTTTCCCGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttctctactgtttaatattattcattttattctcgaattattgtaagagtatttaatattagcgactcttatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT