Sequence
atgc intronic sequence ATGC exonic sequenceGTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGGtatattcttatatttggtctcttcagttgctattcaatgtaaggttaaaatttaggatgatataggatgtagaaaaggaagagatatgaatgtaaatgaa...
Basic information
species | Glycine max |
transcript | GLYMA18G06770.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 18
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 16
GTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGGtatattcttatatttggtctcttcagttgctattcaatgtaaggttaaaatttaggatgatataggatgtagaaaaggaagagatatgaat-gtaaatgaa
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GTGAATACGCATCTCACCCCACGACCAATACTACTCACTCGGCATGGAGAAAGCATGGATAATGTTAGAGGCAGAATTGGAGGAGATAGCGTAATAAGgtatgttctctgctctgtctcttccaaatgccgtt-ggtttcagccttttttttttcttctttttttttgaatacctttcagtttttcgttttgtttgcca-
upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 16
GTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGGtatattcttatatttggtctcttcagttgctattcaatgtaaggttaaaatttaggatgatataggatgtagaaaaggaagagatatgaatgtaaatgaa----
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GTTAATACACATCTCACACCCCGACCAATTTTACTTACTAGGCATGGAGAGAGTCGGGATAATGTTAGAGGTAGAATTGGGGGTGACACTGCATTAAGgtatacaat-ataccttttctagattgttg--atttattattttgttggt-ttaactatctttcaaaaatcatagaattgtctgat-tgaatgataatgattttc
upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 15
GTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGGtatattctta----tatttggtctcttcagt-tgctattcaatgtaaggttaaaatttaggatgatataggatgtagaaaaggaagagatatgaatgtaaatgaa
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GTCAATACTCATATCACTCCACGGCCAATATTTCTTACTCGACATGGTGAAAGTGAGGATAATGTGAGGGGTCGTATTGGAGGAGATCCTGTACTTAGgtactttcttgaccttgtgtgttccccccagagtatcattgactgcataattt---ttttggtggatttccttctctggtagatgtgccttccaattcttaga---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8669465|gb|BE190572.1|BE190572EST: AAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGT GAGGCAGGAGAACTTTATTCAAAGAAGCTTGCCAAGTTTGTTGGAAAGCGT
genomic: AAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGGtatattctta ... ttataacagtGAGGCAGGAGAACTTTATTCAAAGAAGCTTGCCAAGTTTGTTGGAAAGCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAAATACACATCTTACCCCACGCCCAATTTTACTTACTCGACATGGGGAAAGTCAGGATAATGTGAGAGGCAGAATTGGAGGGGATACTGCAATAAGGtatattcttatatttggtctcttcagttgctattcaatgtaaggttaaaatttaggatgatataggatgtagaaaaggaagagatatgaatgtaaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagga