Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCTGTTTTCCACAATGCTAGTACAAGATTCAGTGATGGGGCACGATTTGGACTAGGTGCAGAGgtatgatattctttacattcttttaataatcattctcttatgctaaagtcattgatttaattcataattctcatgtcattggcttttatag

Basic information

species Glycine max
transcript GLYMA18G03830.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 18
lower sequence: AT3G55610.1 (Arabidopsis thaliana), 5'ss of exon 18
TGCTGCTGTTTTCCACAATGCTAGTACAAGATTCAGTGATGGGGCACGATTTGGACTAGGTGCAGAGgtatgatattctttacattcttttaataatcattctcttatgctaaagtcattgat-----ttaattcataatt--ctcatgtcattggcttttatag----
||||||||||||||||||||| || |||||||||  ||||||     | || ||||| ||||| |||||| |  |         ||      |  ||||      ||  | |||   || ||      | |||  |||| |  |  |||| ||| | | ||||      
TGCTGCTGTTTTCCACAATGCAAGCACAAGATTCTCTGATGGTTTTAGGTTCGGACTTGGTGCTGAGgtagggaagagagagagttaccaataatatcacatatataaaccaaacaaatggagaagtgtcaatgaataaatggccaatgtgatttgttcttatgtatag

upper sequence: GLYMA18G03830.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
TGCTGCTGTTTTCCACAATGCTAGTACAAGATTCAGTGATGGGGCACGATTTGGACTAGGTGCAGAGgtatgat--attctttacattcttttaataatcattctcttatgctaaagtcattgatttaattcataattctcatgtcattggctttt--atag
||||||||| || ||||||||||| ||||||||  |||||||||| || |||||||| || || |||||||| |  | |    || ||  ||  | | | || |   |  | | | ||| ||        | ||  || |||| |   |   |  |  ||||
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaattaccacgtttattggacattaatccatgtg-gttgaggtccttacccc---tgatggttttcatttttcttaatgctgaatag