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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTGAATTTTTTGGTACTCTGTCAAGAGAATGGGCATTAGAGTGTATGAAAGACCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATTATTGTGCAGgtatggaactatcattgtcttctataacatggaattattaatatttgattgaaactgaaagcttactaacttctgtctag

Basic information

species Glycine max
transcript GLYMA18G02960.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 19
CGTTGAATTTTTTGGTACTCTGTCAAGAGAATGGGCATTAGAGTGTATGAAAGACCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATTATTGTGCAGgtat-----ggaactatcattgtcttctataacatggaattattaatatt-----tgattgaaactgaaagcttactaacttctgtctag
 ||||| || ||||| ||||| |||||||| ||||| || ||||| ||||| |||||  ||||||||||||| ||||| || || || ||| |||| |||||||       |  ||   |   ||||  |    ||  | |  | | |||     |||||   |  ||||  |   | |  ||||     
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtatttgctacatttagtttaaccttcccttttttgtcacttctcacattggttctgattattatcgaaacatgtgtcatatctgcag--

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 19
CGTTGAATTTTTTGGTACTCTGTCAAGAGAATGGGCATTAGAGTGTATGAAAGACCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATTATTGTGCAGgtat-------ggaactatcattgtcttctataacatggaattattaatatt-----tgattgaaactgaaagcttactaacttctgtctag
 ||||| || ||||| ||||| |||||||| ||||| || ||||| ||||| |||||  ||||||||||||| ||||| || || || ||| |||| |||||||            ||   |   ||||  |    ||  | |  | | |||     |||||   |  ||||  |   | |  ||||     
TGTTGAGTTCTTTGGCACTCTTTCAAGAGAGTGGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTAAGAGGGAATCTTCAAATTGTTGTACAGgtatttttgctacgtttagtttgaccttcccttttttgtcacttctcacattggttctgattattatcgaaacatgtgtcatatctgcag--

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 18
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 19
CGTTGAATTTTTTGGTACTCTGTCAAGAGAATGGGCATTAGAGTGTATGAAAGACCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATTATTGTGCAGgtatggaactatcattgtcttctataacatggaattattaatatttgat-tgaaactgaaagcttactaacttctgtctag
 || || |||||||||||||| || || || |||||| | ||||| |||||||| ||  || ||||||| || ||||||||||| ||||| || || ||||||||   || | |||||    | ||| |||  | | ||| | ||| || ||| |||||   | |    |  ||| |  ||
TGTCGAGTTTTTTGGTACTCTTTCTAGCGAGTGGGCAATGGAGTGCATGAAAGATCTCCTGTTGGTCAACCTGAGAGGCAACCTTCAGATAATCGTTCAGgtatgtg-ctgt-attgt----tgtaagatgtgaattttattgtttaatgtgacactga---cgtgtccatgtctttgcag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 19
CGTTGAATTTTTTGGTACTCTGTCAAGAGAATGGGCATTAGAGTGTATGAAAGACCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATTATTGTGCAGgtatggaactatcattgtcttctataacatggaattattaatatttgattg-aaactgaaagcttactaacttctgtctag----------
 || || || |||||||| || ||| |||||||||| || ||||| ||||| |||||  | ||||||||||| ||||||||||| ||||| ||||| ||||||     | |||||||||||||     ||||| | ||  | ||    ||| ||||| |   ||| ||  |     | | |          
TGTAGAGTTCTTTGGTACGCTTTCACGAGAATGGGCTTTGGAGTGCATGAAGGACCTTCTTCTGGTCAATCTAAGAGGCAACCTTCAGATAATTGTTCAGgtac----ccatcattgtcttctg----atgga-tgatccagatcgacttgtaaacttatttcttgctttcgctaatattggtctgtgcag