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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTTTGTTGATTTCTTCTGCAATCCTGAGCGATTAAGGAGCCAAGTTAGGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctcttctcttttacattctttctctctctggttgtgtaatactgttattatgatttttctatatgcttatttttatccatatggataatgtgctaatcttttgtttatacaagtttttttttttgtccag

Basic information

species Glycine max
transcript GLYMA17G15510.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209709890|gb|BW668294.1|BW668294
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|57574285|gb|CX547260.1|CX547260
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|214010096|gb|DB989468.1|DB989468
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|213605084|gb|DB982348.1|DB982348
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|58014978|gb|CX701720.1|CX701720
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|214006531|gb|DB986338.1|DB986338
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|209729309|gb|BW660355.1|BW660355
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|208321298|gb|GE125483.1|GE125483
EST:     TTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: TTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|22933194|gb|BU550333.1|BU550333
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|208068789|gb|GD863237.1|GD863237
EST:     TCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: TCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|15815108|gb|BI787383.1|BI787383
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
EST: gi|17401211|gb|BM177993.1|BM177993
EST:     GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAA                         TTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT
genomic: GGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctctt ... ttttgtccagTTTACTCAAGTGTTTTAACATTTCATGCCTCCGAACCTGTGGACGAACGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTTTTGTTGATTTCTTCTGCAATCCTGAGCGATTAAGGAGCCAAGTTAGGGATCTGACTGATCGTGTCAGAGCTATGCAAATTTCGTAGCAATCATAAgtactctcttctcttttacattctttctctctctggttgtgtaatactgttattatgatttttctatatgcttatttttatccatatggataatgtgctaatcttttgtttatacaagtttttttttttgtccag

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