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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGgtgattgtttgtgcccttttgctacttacgtgtcgttccagctttgcttattagaagttattctgtcaggagagttcataaacactgtattttaaatcgttttgcttgctcag

Basic information

species Glycine max
transcript GLYMA17G13850.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426254|gb|CA937774.1|CA937774
EST:     TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAG                         GATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
genomic: TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGgtgattgttt ... gcttgctcagGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
EST: gi|16277629|gb|BI942480.1|BI942480
EST:     TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAG                         GATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
genomic: TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGgtgattgttt ... gcttgctcagGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
EST: gi|298164997|gb|HO011046.1|HO011046
EST:     TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAG                         GATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
genomic: TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGgtgattgttt ... gcttgctcagGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
EST: gi|254327049|gb|GR836658.1|GR836658
EST:     AAATCACTTAAG                         GATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
genomic: AAATCACTTAAGgtgattgttt ... gcttgctcagGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
EST: gi|192294988|gb|FG986707.1|FG986707
EST:     TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAG                         GATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
genomic: TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGgtgattgttt ... gcttgctcagGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
EST: gi|298163750|gb|HO012483.1|HO012483
EST:     TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAG                         GATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT
genomic: TCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGgtgattgttt ... gcttgctcagGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTCTGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGgtgattgtttgtgcccttttgctacttacgtgtcgttccagctttgcttattagaagttattctgtcaggagagttcataaacactgtattttaaatcgttttgcttgctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA