Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGACTCGTTTTGGACACATGCATGTGACGTGGAGAAAATGAGTCAGATTCTTAGAGAAAAATTTGTGGAACTTTATAGCATGCCAATACTTGAAAATgtaatcttttttctgtatcatgagaaactttggcttattttataggaatatatggagaaaagttatttcttattttctcattatctaatattaaacatcatgtccttacttaatgcaaatcttttgccttttagaccaatggagggagaaaaaaaactcattatttgataattttgatatgttaacag

Basic information

species Glycine max
transcript GLYMA17G07940.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07940.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 5'ss of exon 18
TCATGACTCGTTTTGGACACATGCATGTGACGTGGAGAAAATGAGTCAGATTCTTAGAGAAAAATTTGTGGAACTTTATAGCATGCCAATACTTGAAAATgtaatcttttttctgtatcatgagaaactttggctt-attttataggaatatatggagaaaagttatttcttattttctcattatctaatattaaacatcatgtccttacttaatgcaaatcttttgccttttagaccaatggagggagaaaaaaaactcattatttgataattttgatatgttaacag
 |||||||||||||||   ||||||||||| || || ||||||| |||||| || |||||| |||||||||| ||||| ||||||||||| ||||||||||||  ||                  |||  || ||| ||| || |      | |    |||   ||  | | |   |  | |   |||| | |     | || || ||  | |||   ||| |||  | ||| ||                                                      
GCATGACTCGTTTTGGGTGCATGCATGTGATGTTGATAAAATGAATCAGATACTGAGAGAACAATTTGTGGAGCTTTACAGCATGCCAATTCTTGAAAATgtatgctaacaggcactattcactcaacagtgtcttcattctacacttcacttt----aaactctacatgtgaggattacttcccctaacaat-----ttatttcttt--tcaatttgaatgttt--cttttcag------------------------------------------------------

upper sequence: GLYMA17G07940.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G115564_T02 (Zea mays), 5'ss of exon 18
TCATGACTCGTTTTGGACACATGCATGTGACGTGGAGAAAATGAGTCAGATTCTTAGAGAAAAATTTGTGGAACTTTATAGCATGCCAATACTTGAAAATgtaatcttttttctgtatcatgagaaactttggcttattttataggaatatatggagaaaagttatttcttattttctcattatctaatattaaacatcatgtccttacttaatgcaaatcttttgccttttagaccaatggagggagaaaaaaaactcattatttgataattttgatatgttaacag
||||||||| ||||||   ||||| ||||| || ||  ||||||  |||||  | ||| || |||||||||| ||||| |||||||| || ||||||||||||    |    ||| | ||  |    |||   ||    ||| ||  |  |      | || | |    | ||   |  | |   |||| ||     | || |   | | |  |||| |||||| |   || ||                                                      
TCATGACTCATTTTGGGTGCATGCGTGTGATGTTGATCAAATGAACCAGATATTGAGACAACAATTTGTGGAGCTTTACAGCATGCCGATTCTTGAAAATgta----tgccactggaaca--attgtcttcaactc---ttaaagttacttcattctacaactgagcaataatcgcc--aatgcttaatgtt-----ttatttatatgcattttgcatatctttggtgattcag------------------------------------------------------

upper sequence: GLYMA17G07940.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv11s0037g00630.t01 (Vitis vinifera), 5'ss of exon 18
TCATGACTCGTTTTGGACACATGCATGTGACGTGGAGAAAATGAGTCAGATTCTTAGAGAAAAATTTGTGGAACTTTATAGCATGCCAATACTTGAAAATgtaatcttttttctgtatcatgagaaactttggcttattttataggaatatatggagaaaagttatttcttattttctcattatctaatattaaacatcatgtccttacttaatgcaaatcttttgccttttagaccaatggagggagaaaaaaaactcattatttgataattttgatatgttaacag
 |||||||| || ||||||||||||||||| || || || |||| |||||| ||| | ||||||||||| || ||||| || ||||||||||||||||||||||   | || |    |  |      |  |   ||| | |    |  | ||     | || || |||   || |  | | | ||  |  | ||  |   || | |                                                                                  
GCATGACTCCTTCTGGACACATGCATGTGATGTTGACAAGATGAATCAGATACTTCGGGAAAAATTTGTAGAGCTTTACAGTATGCCAATACTTGAAAATgtaagtgtattgcaaccttctt----tccctatattaatgtgagagcctgtaaatttagaatttcttttggatgtgttgaatgtc--acctgaagaagtgtgcctt----------------------------------------------------------------------------------