1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTGCTGTTAATGTCACTAAAAGCTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgcaaactgttttttaaccaaatcacatggggataaagtgtaataaatttgaactctgataattggatttctatcaacattgggtatgatccaca...
species | Glycine max |
transcript | GLYMA17G05390.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTCTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATEST: gi|208062975|gb|GD860877.1|GD860877
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgcaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
EST: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACC-ATGGTGGAATCCTGCEST: gi|208340160|gb|GE133202.1|GE133202
genomic: CTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgcaa ... ctttggacagGACCCATGGTGGAATCCTGC
EST: TGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATG GACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
genomic: TGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgcaa ... ctttggacagGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGTTAATGTCACTAAAAGCTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGgtacgtgcaaactgttttttaaccaaatcacatggggataaagtgtaataaatttgaactctgataattggatttctatcaacattgggtatgatccaca
- - - - - - - - - - - TGGTGG
- - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAGCT