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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGAAGAATTCAGTGTCAGATTGGAACAAAGCCGGAGATACTATCAAACATATGTGAATTACTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttccttgttgctctgcagtatcggttgactttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttag

Basic information

species Glycine max
transcript GLYMA17G03570.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 18
GACGAAGAATTCAGTGTCAGATTGGAACAAAGCCGGAGATACTATCAAACATATGTGAATTACTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttccttgt-tgctctgcagtatcg--gttgactttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttag
   ||| | || |   ||||||    |||||||| || ||||| |||||||| |||||| | || |||||||||||  | || |||||||| ||||||||||| |   |||  |||| ||| || |     || | | |||| |||   || ||  ||        ||  ||   ||| ||||||  ||
ATGGAAAAGTTGAAAATCAGATCACCACAAAGCCTGAAATACTGTCAAACATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAAgtaatcttttggatgctttgctgtgtgatcatttaatatttgatgtcctgc-tgctaacag-----attatttctttttctgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347786|gb|GR854035.1|GR854035
EST:     ATATGTGAATTACTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAGAAAATATTGCTATTGATACG
genomic: ATATGTGAATTACTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAGAAAATATTGCTATTGATACG
EST: gi|208046991|gb|GD846552.1|GD846552
EST:     TATGTGAATTACTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAGAAAATATTGCTATTGATACG
genomic: TATGTGAATTACTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAGAAAATATTGCTATTGATACG