Sequence
atgc intronic sequence ATGC exonic sequenceGTTTGGTGAGTCTGAGCCTGATGATGCAGTGAGAGATAATGCCGCTGGTGCCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAACCAGgtaatgtctgctttatttatatggatcatgctttctcaatgagaactgtcatgaatacttaaactgatagacatcactctaatttcttcaattataatattgttgtgtatacttgatagccaattgttggtattcaatgtctttgatgcattttacag
Basic information
species | Glycine max |
transcript | GLYMA15G05090.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os03g15540.1 (Oryza sativa), 5'ss of exon 7
GTTTGGTGAGTCTGAGCCTGATGATGCAGTGAGAGATAATGCCGCTGGTGCCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAACCAGgtaatg--tctgctttattta-tatggatcatgctttctcaatgagaactgtcatgaatacttaaactgatagacatcactctaatttcttcaattataatattgttgtgtatacttgatagccaattgttggtattcaatgtctttgatgcattttacag
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GTTTGCTGATTCTGAACCTGATGACGCAGTTAGAGATAATGCTGCCGGTGCCATTGCTAGGATGATAATGGTGCAGCCTCAGTCAATTCCACTCAACCAGgttggcactctgcagtacataatattttgcataatttcagatttcaaact-tca-gagtgct-ggtctaatacgcatt-ctgtgcttgattc--ttag---------------------------------------------------------------
upper sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 5'ss of exon 18
GTTTGGTGAGTCTGAGCCTGATGATGCAGTGAGAGATAATGCCGCTGGTGCCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAACCAGgtaatgtctgctttatttatatggatcatgctttctcaatgagaactgtcatgaatacttaaa-ctgatagacatcactctaatttcttcaattataatattgttgtgtatacttgatagccaattgttggtattcaatgtctttgatgcattttacag
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ATTTGGGGAATCTGAGCCAGATGATGCCGTAAGAGATAATGCAGCTGGTGCAGTGGCAAGGATGATTATGGTTCACCCTGAGGCCATCCCATTGAATCAGgttat-ttttctgttttcgtcttg-tgactctttatcatccttaatccttatgatttgtcatttcttttgggcttttctatctatttcttagttat--ttttctcag----------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18039701|gb|BM307995.1|BM307995EST: CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAACCAG GTTCTTCCTGTTTTCTTGAGAGTTCTTCCATTAAAAGAAGACCACGAGGAG
genomic: CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAACCAGgtaatgtctg ... cattttacagGTTCTTCCTGTTTTCTTGAGAGTTCTTCCATTAAAAGAAGACCACGAGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTGGTGAGTCTGAGCCTGATGATGCAGTGAGAGATAATGCCGCTGGTGCCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAACCAGgtaatgtctgctttatttatatggatcatgctttctcaatgagaactgtcatgaatacttaaactgatagacatcactctaatttcttcaattataatattgttgtgtatacttgatagccaattgttggtattcaatgtctttgatgcattttacag
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