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TGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGCTAGAAGCACTAAGGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctcactttgccaacgtttgctttctttctaggactaatatcttagacataatttggtttttggattcctggcctactggtctgcctattccctg...
species | Glycine max |
transcript | GLYMA15G01980.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAG CTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAAEST: gi|151408005|gb|EV277820.1|EV277820
genomic: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAA
EST: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAG CTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAAEST: gi|120530587|gb|EH258720.1|EH258720
genomic: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAA
EST: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAG CTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAAEST: gi|193724698|gb|FK658500.1|FK658500
genomic: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAA
EST: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAG CTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAAEST: gi|21602173|gb|BQ612504.1|BQ612504
genomic: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAA
EST: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAG CTGGAGGAACTTCGTEST: gi|15813354|gb|BI785629.1|BI785629
genomic: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGT
EST: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAG CTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAAEST: gi|151407143|gb|EV276958.1|EV276958
genomic: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAA
EST: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAG CTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAAEST: gi|13240485|gb|BG359794.1|BG359794
genomic: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAA
EST: GCGAACGTGATGAAGAG CTGGAGGAACTTCGTGCGGATATTGTAGACTTG-AGGAAATGTACAGAGAAEST: gi|10843601|gb|BF067198.1|BF067198
genomic: GCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAA
EST: AGAGGAGGCACTGTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAG CTGGAGGAACTTCGTGCGGATATTGTAGACTGGAAGGAAATGTACAGAGAA
genomic: GGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctca ... atgtgtttagCTGGAGGAACTTCGTGCGGATATTGTAGACTTGAAGGAAATGTACAGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGAGGCTGCTGTATTACCTGGCTTACGATCAGAGCTAGAAGCACTAAGGAGGAGGCACTCTGCTGCTTTGGAATTGATGGGCGAACGTGATGAAGAGgtaattctcactttgccaacgtttgctttctttctaggactaatatcttagacataatttggtttttggattcctggcctactggtctgcctattccctg
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA