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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaagcaatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtcttgtacag

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 20
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtattt-----cttaagaagc-aatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtcttgtacag
| | ||| ||||| || |||||||| ||||| ||||| |||||||||||||| || || || || || |||||||||||||| || |||||||| || ||||| ||     ||   || |   || |    || | || || | | |  ||  |   ||   | ||  ||  | |     |  ||                            
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactactcctgatgttgatatgtgcga-agcaattttgtccttaacgtggcgcaccttaatatcgttctttacattcaacag-------------------------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 20
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaagcaatgt--acatg---acaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtcttgtacag
| | ||| ||||| || |||||||| ||||| ||||| |||||||||||||| || || || || || |||||||||||||| || |||||||| || ||||| ||    | |    ||||  | |||     | || || | | |  ||  |   ||   | ||  ||  | |     |  ||                            
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactacacctgatgttgatatgtgcgaagcaattttgtccttaacgtggcgcaccttaatatcgttctttacattcaacag-------------------------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaagcaatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtct-tgtacag--
||| |||||| || || |||||||| ||||| ||| | ||||| |||||||| || ||||| || || ||||||||||||||  | ||||||||||| ||||| ||  |       | |    |||     | ||||  |       ||      |   |  | | |  || |  |     |||   ||  ||| | | | | | ||   
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactct----tactcctgatgttggtatttcttaaggtggcataccttaatattaaatttctcaacatggcatgcattgatattaaattttctttatattcatag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 7
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaagcaatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtcttgtacag
| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| ||||| ||  |     ||      ||  |  ||  |     |       | |   | |  || | | |   || |    | ||||  ||||  || |      |     
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctctt--gctgacagcagaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacacacctg---agtttt--ctttacatgcaacagcgag---

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaagcaatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtcttgtacag
| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| ||||| ||  |     ||      |   |  ||  |     |       | |   | |  || | | |   || |    | ||||  ||||  || |      |     
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctctt--gctgacagcggaatgcctttctcaaattttgcgtgtctttctcaaaatgcaacacacctg---agtttt--ctttacatgcaacagcgag---

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgta---tttctta--agaagcaatgtacatgacaccagttct-------ctacacaaactattgc-ttttcaagttctatttacttttctaattttggctttttat-tctgtcttgtacag
| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| || || ||||||||||||||  | ||| ||||||| |||||   | ||||      |||    | | |  | | | || |        | | |||| |    |       || | | ||||| |     |    ||      || ||  | |       
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgtgtgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag---

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 6
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttcttaagaagcaatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtcttgtacag
| | ||| ||||| || |||||||| ||||| ||| | |||||||||||||| || ||||| |  || ||||||||||||||  | ||| ||||||| ||||| ||  |         |||  |   |   | | |  | | |||| | |||  | ||    || |  | |    | |  |  || || ||    ||      ||||
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGACCTTTACTTTTTCTTGGGATCTTATCTGAGCTCCAGgtaatttctct-------tgttgacagcgg-aatgcctttctcaaatt-ttgtgtgtctttctcaaaatgcaacac-acctgaggtttctttacatgca----acag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 20
ATTGTGAACAGCTGGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGgtatttctt--aagaagcaatgtacatgacaccagttctctacacaaactattgcttttcaagttctatttacttttctaattttggctttttattctgtcttgtacag
||| ||||||| |||||||||| ||||| || ||||| |||||||| |||||||| ||||||||| ||||||||||||||||  ||||||||||||| |||||||||||  || ||   |   |  ||||   | || |   ||     | |   |||||      |||||       | ||||||                       
ATTCTGAACAGTTGGGTGTTGAGGCATGTATAAAACTGTTTGAGCAGTTCAAGTCTTATGAAGGATTATACTTTTTCTTGGGGTCATATTTGAGCTCCAGgtatttcttttaataaaagaaaaaactgactttaattttaagcattttttgtatattttc-----ttatttttcaccttcattttgagacag-----------------