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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTACGAATTAGATGGCATTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGTGTGTTTGGATCTCTTTGAGAAGgtatttatatggtttaagatttctaaaattttatagctattcctctttcgctgagctggaaaccagaccaatgtttttatttttgttgcattctttttta...

Basic information

species Glycine max
transcript GLYMA12G34780.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34780.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv19s0014g03640.t01 (Vitis vinifera), 5'ss of exon 16
GATTACGAATTAGATGGCATTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGTGTGTTTGGATCTCTTTGAGAAGgtatttatatggtttaag-------atttctaaaattttatagctattcctctttcgctgagctgga-aaccagaccaatgtttttatttttgttgcattctttttta
|| || ||||| ||||| ||||||||||  | ||| |||||||| |||||||| | |||||| ||||||||||| ||||||||| |||  | | ||       || | || | || | | |  |  |    ||  ||   || || ||  |||| |    ||| || | |  ||   | | |    
GAATATGAATTGGATGGGATTGATTGGAAAAGAGTTGATTTTGAAGACAATCATGAGTGTTTAGATCTCTTTGAAAAGgtatttctattatatgagctaatgcatgtgtagatttctttggtcacacta--ttaacttctctagagaatgagacta----tttcatatctagtgtgatgtgtaa--

upper sequence: GLYMA12G34780.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S174_120V6.1 (Physcomitrella patens), 5'ss of exon 15
GATTACGAATTAGATGGCATTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGTGTGTTTGGATCTCTTTGAGAAGgtatttata--tggtttaagatttctaaaattt-tatagctattcctctttcgctgagctggaaaccagaccaatgtttttatttttgttgcattctttttta
|| |||   | |||   |||||||||||||| |||||||||||| || ||||||| |||| | |||||  ||||||||||| ||||   | |  | | |   || || | | |  |  ||  |  |||         |  |    ||    |  |    || || |||   ||  ||    
GAGTACACCTCAGAAAACATTGATTGGACCAGAGTAGATTTTGAAGATAATCAAGAGTGTCTTGATCTTATTGAGAAGgtaattatgctttgcatcacacaactcaagtatgtgaaattaaacgacttcaaaaatcttctatcatagtgtcaactggcaatcttggttcttttgattg---

upper sequence: GLYMA12G34780.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 14
GATTACGAATTAGATGGCATTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGTGTGTTTGGATCTCTTTGAGAAGgtatttatatggtttaagatttctaaaattttatagctattcctctttcgctgagctggaaaccagaccaatgtttttatttttgttgcattctttttta-------------------------------------------------------------------------------------
|| ||   ||  ||    ||||||||||| | ||| |||||||| |||||||||| |||| | |||||  ||||||||||||  ||    |||| || || |     | ||     ||       |||   | | | | |    ||| || || ||      | |    |  ||   |                                                                                     
GAGTATACATCCGAAAATATTGATTGGACAAGAGTGGATTTTGAAGACAATCAAGAGTGTCTTGATCTTATTGAGAAGgtatacatgctttttatgactttt-----tctaggcacatgaactgatcgacaatccgaacaaattaccgattttgttggaccgggtcttgttattgcgaaaagttcaaataatgtgtaagaccactgcaaatcatatcattgcggataataaacctaacaatgttatggacatacactgggcag