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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCTACTTTGATAATGACTCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAGgtgagtgtatttattgtcacataactggtaattttgttaggatgaatctgtcatgtgggttaatcaaacagcatgactttatttcttaaagcaaagtttt...

Basic information

species Glycine max
transcript GLYMA12G29710.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29710.2 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g02770.t01 (Vitis vinifera), 5'ss of exon 18
GATGTCTACTTTGATAATGACTCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAGgtgagtgtatttattgtcacataactggtaattttgttaggatgaatctgtcatgtgggttaatcaaacagcatgactttatttcttaaagcaaagtttt-----
||||||||||||||| |||| |||||  ||||||| || |||||||| |||||  |||| || |||||||||| ||| | |      |  |   || | ||||     | | |||||      || ||| |     | |||  ||||     |   | ||||  || ||||     
GATGTCTACTTTGATGATGAATCTGCTGAAGTAGTGATCTCATCCCTGAGACTTGGTGATGACCAAGGGAGgttagtttttgagccatttcgatac-gataatagctgttgcatgaa---aaaatatggatcctgaataca-tatgagcaattggttaaaagggaaattttttgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814512|gb|BI786787.1|BI786787
EST:     TCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAG                         TAGTCTGTTTACAAACTCCAACTGGTTTGAATTCCAAGATGACAGAATTGG
genomic: TCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAGgtgagtgtat ... tcttttgcagTAGTCTGTTTACAAACTCCAACTGGTTTGAATTCCAAGATGACAGAATTGG
EST: gi|23731914|gb|BU764104.1|BU764104
EST:     TCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAG                         TAGTCTGTTTACAAACTCCAACTGGTTTGAATTCCAAGATGACAGAATTGG
genomic: TCTGCACAAGTAGTCATATCATCCCTCAGACTCAGTGACGATCAAGGGAGgtgagtgtat ... tcttttgcagTAGTCTGTTTACAAACTCCAACTGGTTTGAATTCCAAGATGACAGAATTGG