Sequence
atgc intronic sequence ATGC exonic sequenceGCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatcctttatttgaccatgttgtctactttgataatcactaagggggcatttggtgggggataaatttttagtttcctgggaatgttagattggaaatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os04g41490.1 (Oryza sativa), 5'ss of exon 20
GCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatcctttatttgaccatgttgtctac--tttgataatcactaagggggcatttggtgggggataaatttttagtttcctgggaatgttagattggaaatc
|| ||||| | |||| |||| ||| ||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||| ||||| || |||||||||||||| ||| | ||| | | || | | | | | | | || | || || | | || || |
GCCGGAGCATCAATTGGGGCAATTGGGGCTCAAAGTATTGGAGAGCCTGGAACTCAGATGACATTGAAAACTTTCCATTTTGCAGGAGTAGCTAGCATGAgtatcctatatactatatggttcgtgaaagtctgcttttaattttaagaattactagcaggtcgttttggcctatttcctataatttatttactttagag--
upper sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G178236_T02 (Zea mays), 5'ss of exon 1
GCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatcctttatttgaccatgttgtctactttgataatcactaagggggcatttggtgggggataaatttttagtttc-ctgggaatgttagattggaaatc
|| ||||| || |||| |||| ||||||||| |||||||| ||||| ||||| |||||||| ||||||| || || ||||| ||||| || |||||||||||||||| | | | | | || | | | | ||||||| | || | | ||| | | | | || || ||
GCAGGAGCATCTATTGGAGCAATTGGAGCTCAAAGTATTGGGGAGCCAGGGACTCAGATGACACTGAAAACATTTCATTTTGCGGGAGTAGCTAGCATGAgtatcctttttaccgctgcttcaggaaaat-attactgaattctgtggcatttaaacatgctcaattaagatgcttcattttgtttttcagtttctttttc
upper sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G60040.1 (Arabidopsis thaliana), 5'ss of exon 21
GCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatcctttatttgaccatgttgtctactttgataatcactaagggggcatttggtggggg-ataaatttttagtttcctgggaatgttagattggaaatc--
||||| || | |||| ||| |||||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||| | | | ||| || ||| | | | || | | || ||| | | | | |||| ||
GCTGGGACTGCAATTGGGACAATAGGAGCTCAGAGTATTGGAGAACCTGGGACACAAATGACTTTGAAAACTTTTCACTTTGCTGGAGTTGCGAGCATGAgtatccttg--ttgaaaatgcc-tattttctgaatttcgctataaaactagtgcttatacatatgagtagttggttgttttg-atttcctgattctggttcag
upper sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g03730.t01 (Vitis vinifera), 5'ss of exon 1
GCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatcctttatttgaccatgttgtctactttgataatcactaag--ggggcatttggtggggga------taaatttttagtttcctggga---atgttagattggaaatc--------
|||||| || | ||||||||| |||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| | | ||||| |||| || | |||||| |||| | | |||| | | || ||
GCTGGAACTGCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAGCCTGGGACACAGATGACATTAAAAACTTTCCACTTTGCTGGTGTTGCAAGCATGAgtatccttt---taaccattgaaagactcttggcacctttttccccggggcttttgtctattgagtcttctgtattttttttttctggtcaccaatgtggtactttaactctgtattag
upper sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 18
lower sequence: EFJ13293 (Selaginella moellendorffii), 5'ss of exon 20
GCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatcctttatttgaccatgttgtct-actttgataatcactaagggggcatttggtgggggataaatttttagtttcctgggaatgttagattggaaatc
||||| || ||||||| || | ||||||||| ||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||| || |||||||||| | | | |||| ||| | || ||| | || || |
CCTGGAACTGCTGTTGGAGCCATTGGAGCTCAAAGTATTGGAGAACCTGGAACGCAGATGACCTTGAAAACTTTTCACTTTGCTGGAGTGGCTAGCATGAgtaagtctctctcgt---tgttctctcgcctttctaactgcctt---tgctttcaaag-------------------------------------------
upper sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 18
lower sequence: EFJ24638 (Selaginella moellendorffii), 5'ss of exon 20
GCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatcctttatttgaccatgttgtct-actttgataatcactaagggggcatttggtgggggataaatttttagtttcctgggaatgttagattggaaatc
||||| || ||||||| || | ||||||||| ||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||| || |||||||||| | | | |||| ||| | || ||| | || || |
CCTGGAACTGCTGTTGGAGCCATTGGAGCTCAAAGTATTGGAGAACCTGGAACGCAGATGACCTTGAAAACTTTTCACTTTGCTGGAGTGGCTAGCATGAgtaagtctctctcgt---tgttctcttgcctttctaactgcctt---tgctttcaaag-------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254347498|gb|GR853747.1|GR853747EST: GACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGA ATGTTACTCTTGGAGTTCCTCGTGTCAAAGAAATAATGAATGGAAACNNNN
genomic: GACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatccttta ... ctgtcgttagATGTTACTCTTGGAGTTCCTCGTGTCAAAGAAATAATGAATGGAAACAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAgtatcctttatttgaccatgttgtctactttgataatcactaagggggcatttggtgggggataaatttttagtttcctgggaatgttagattggaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggggg