Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcag

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 18
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt-tgattccaactactcaaatgacaca-atctatcgtaaatttgttttatattcttactatatgattatgatgtatttcag
||||| || || || || || ||||| |||||||| |||||||| |||||||||||||||||||||| | ||   || |  |    ||   |   |||||  | | |   |    |  |||   || |  |||||     |      
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtctatttacaccattattgaacag-----

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 18
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt-tgattccaactactcaaatgacaca-atctatcgtaaatttgttttatattcttactatatgattatgatgtatttcag
||||| || || || || || ||||| |||||||| |||||||| |||||||||||||||||||||| | ||   || |  |    ||   |   |||||  | | |   |    |  ||    || |  |||||     |      
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtccatttacaccattattgaacag-----

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 16
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt-tgat-tccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcag
|||||| | ||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| || | | ||  ||      |||   ||| ||||     ||| | || | |  | || |  |  ||     |        
CATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtgttcagttatgttcttga---aatgtatctgttgttt-tcttgtttattaacaacttccttgcacag--------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt--tgattccaactactc--aaatgacacaatctatcgtaaatttgttttatattctt---actatatgattatgatgtatttcag-----------
|||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||||||   || | ||  || |   | ||  |    | |||  |       ||  | | |         | |   || |   ||  ||  |           
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttagatatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt--tgattccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcag
|||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||||||   || | ||  || |    | | | |   | |  | |||  |||||      | || |  |  ||     |        
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattt---tcagatatcttttttttaat--gttttgcccattaacaacttccttggacag--------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttttgattccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcag
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||       |||    | | || ||    |||||   ||  | || || | |||| ||||||||       | ||||||||
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagtgttacataacttgttctatttgaatgtagtatttttttctaactatatgg------tatatttcag