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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgtatgcacatctgtttttccaacatattacatgataatatatgggtggaatttgtgggaacgatctatataatttgaaatttttgtatggactgtaactgtatcatcatatctattttcttgtttctgatggtgttccattttatacag

Basic information

species Glycine max
transcript GLYMA10G42960.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os04g59494.4 (Oryza sativa), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgtatgcacatctgtttttccaacatat-tacatgataatatatgggtggaatttgtgggaacgatctatataatttgaaatttttgtatggactgtaactgtatcatcatatctattttcttgtttctgatggtgttccattttatacag
 || ||  | ||||||||| ||||    ||||||||||||||| | || || || |||||| | || ||||| || |||||||||||||||||  | || |||   |||  | || |     | ||  | |   |   |  |   |   ||||||     | | ||  |  |     |  ||   | ||    ||  |                                                    
AGATATATTTATGCCACCACTAATCACAAAATGGCAGCAACTTGCCAACTCTGATAAAGATTTATTCCCACTGCTCGAATGCTTTACATCTATCGCTCAGgtacttacagtttttgtctgtgcttaccttctctagtttgaacatgctaaatttgatttgaaggtcccttcatacccattttagagcatcttttgcgata--------------------------------------------------

upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgta-tgcacatctgtttttccaacatattacatgataatatatgggtggaatttg--tgggaacgatctatataatttgaaatttttgtatggactgtaactgtatcatcatatctattttcttgtttctgatggtgttccattttatacag
 || ||  | ||||| || || ||   ||| |||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||  |||| ||| ||    | |  | |    | ||  |  ||| |  | | ||  |  |  ||   ||| ||  ||||||  ||    |  ||   ||| |   ||    |                                                  
AGATATATTTATGCCGCCTTTGATCACGAAGTGGCAGCAACTTTCCAATTCTGACAAAGATCTATTTCCACTCCTTGAATGCTTTACATCTATTGCACAGgtactgtggttttaatctgtggaaatcatctatgttttt-tctgaatataccttatctggaaatcatctattgaaac--agtttggagtaggagttgctttta-------------------------------------------------

upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 18
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgtatgcacatctgtttttccaacatattacatgataatatatgggtggaatttgtgggaacgatctatataatttgaaatttttgtatggactgtaactgtatcatcatatctattttcttgtttctgatggtgttccattttatacag
||| ||||| ||||| ||| |  |||  || ||||| ||||||||||||||||| |||||||| |||||| | || || ||||||||||| || || || |||||  |  ||    |  |||  | |||        |||| ||     ||      ||||||   | |  ||    |||  |  ||     || || | ||                                               
TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatgggctact----tgtcaaggtcttaagaatatctataaggtcttgatacagttgaacgaatgaaactatccttaatgatcctactctgtgaaattatagt---------------------------------------------

upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv18s0001g00910.t01 (Vitis vinifera), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgtatgcacatctgtttttccaacatattacatgataatatatgggtggaatttgtgggaacgatctatataatttgaaatttttgtatggactgt-aactgtatcatcatatctattttcttgtttctgatggtgttccattttatacag
||| ||||| ||||| ||||||||||  || ||||||| | |||| |||||||||||||| || |||||||| || || ||||||||||||||| |||| ||||||   | |  ||||     |||  |||  ||  ||  | |      ||      |||   ||||||||| ||| ||  |  |||   || | || ||    |  |                                         
TGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACATCTATAGCACAGgtatgc---tgtactttttgttaataggacagtattgtacttagtcttgttt------aacacactatataatctgatatgatattatattctttcaattgaggaaaaa-----------------------------------------

upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 18
TGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgtatgcacatctgtttttccaacatattacatgataatatatgggtggaatttgtgggaacg-atctatataatttgaaatttttgtatggactgtaactgtatcatcatatctattttcttgtttctgatggtgttccattttatacag
||| ||||| ||||| ||||| || |  || |||||||||||||| |||||||| |||||  |||| ||||| ||||| ||||||||||||||| |||| ||||  ||  | || ||      |  |||    ||  ||| ||  ||   ||   || |     |||| ||||| |  || ||  ||||  ||| | |   |  ||                                            
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttcttttgaccttaagctatgttatttgtttg---ttcaaggaactttgtctacataatatataaattg-gtat--actatgatcatgcca--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327364|gb|FK019581.1|FK019581
EST:     CAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACAT                         GCTCTGGGTACTGGTTTCACTCAATTTGCTGAACCTGTATTTAGGAGGTGC
genomic: CAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgtatgcacat ... ttttatacagGCTCTGGGTACTGGTTTCACTCAATTTGCTGAACCTGTATTTAGGAGGTGC