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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGATGCAATTCGGAAGgtcaggatcactttctctcatcatacacttgttttcttattatgtcaattctgagaagttatatctgtgtag

Basic information

species Glycine max
transcript GLYMA10G38770.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
GGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGATGCAATTCGGAAGgtcaggatcactttctctcatcatacacttgttttcttattatgtcaattctgagaagttatatctgtgtag--------------------
 ||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||||||||| ||||| |  | |  ||   |  | |||  | |   |     |  | || |      | |  ||| ||    | |                     
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgt-aaaaacttttgtgcatagcatgaaatgaatccgccacaaagttagcaa-aacattttacataatcggaaacgggtttgtgtttgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937592|gb|BQ081352.1|BQ081352
EST:     AAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGATGCAATTCGGAAG                         GCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACTTTCATAGTT
genomic: AAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGATGCAATTCGGAAGgtcaggatca ... atctgtgtagGCATGTGCTTCCTTAGAACCAAACTACCAGCCTCCAGTAACTTTCATAGTT