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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGAGTTTCTGGCTATGGTGGATGGTTCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccctcacggctagtgttggggtgtttatatgcaatattaaaacaatgcaactgattcagagactgaacatacttgttactgtag

Basic information

species Glycine max
transcript GLYMA10G35490.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 16
GTCCGAGTTTCTGGCTATGGTGGATGGTTCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccctcacggctagtgttggggtgtttatatgcaatattaaaacaatgcaactgattcagagactgaacatacttgttactgtag
||  | ||||| || |||||||| |||||| | || ||  | || || ||||||||||| |||||||| ||||||||||||     | ||||  |   | |         |  | ||| | |   |   |||  |    | |  |  ||  |                 
GTAAGGGTTTCAGGATATGGTGGGTGGTTCTTGCTGAGGCTCTCTCTGCATGATCCTGTTCTTCCCCTAAACATTGAGgtagttctcttcacttcctctctcaatcctaatgaaggcatt-tcggagtcatgtgat--gtgcgcatgctacag----------------

upper sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G069676_T01 (Zea mays), 5'ss of exon 1
----------------------GTCCGAGTTTCTGGCTATGGTGGATGGTTCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccctcacggctagtgttggggtgtttatatgcaatattaaaacaatgcaactgattcagagactgaacatacttgttactgtag
                      ||  | ||||| || |||||||| |||||| | || ||  | || || ||||||||||| |||||||| ||||||||||||     | ||||  |   | |         |  | ||| | |   |   |||  |    | |  |  ||  |                 
TTTTATGGCATACCATACACAGGTAAGGGTTTCAGGATATGGTGGGTGGTTCTTGCTGAGGCTCTCTCTGCATGATCCTGTTCTTCCCCTAAACATTGAGgtagttctcttcacttcctctctcaatcctaatgaaggcatt-tcggagtcatgtgat--gtgcgcatgctacag----------------

upper sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 16
lower sequence: AT5G17530.1 (Arabidopsis thaliana), 5'ss of exon 18
GTCCGAGTTTCTGGCTATGGTGGATGGTTCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccctcacggctagtgttggggtgtttatatgcaatattaaaacaatgcaactgattcagagactgaacatacttgttactgtag
 |||| ||||| |||| |||||||||||| ||||| ||| | || |||||||||||||| |||||||||||||| ||||||||    |  | |  ||  | |       |||  | || |||  ||||  |    |  |||     | || ||  |             
ATCCGCGTTTCGGGCTTTGGTGGATGGTTTCTTCTCAGACTTTCTCTCCATGATCCTGTTCTTCCCCTTAACATCGAGgtaaa----catatgtataaagcttaa---cttagtttcagtatctaaactttcactcgaatttttcaattggacgcag------------

upper sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 16
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 17
GTCCGAGTTTCTGGCTATGGTGGATGGTTCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccc---tcacggctagtgttggggtgtttatatgcaatattaaaacaatgcaactgattcagagactgaacatacttgttactgtag
|| |||| |||||||| ||| |||||||||||||| ||| | || || ||||| ||||| ||||||||||||||||||||| |  |||   ||| |  |   |||  | | |   ||    |||||         |     ||      |||  | |               
GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatcccctttcaagtgtcacgttaagttataattaccagatatt----ttgcactgacaatatgagaactccatag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17020916|gb|BM091950.1|BM091950
EST:     TCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAG                         GCACCTAGTAATGACGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCT
genomic: TCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccc ... gttactgtagGCACCTAGTAATGACGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCT
EST: gi|58023217|gb|CX709958.1|CX709958
EST:     TCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAG                         GCACCTAGTAATGACGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCT
genomic: TCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccc ... gttactgtagGCACCTAGTAATGACGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCT
EST: gi|208059450|gb|GD856962.1|GD856962
EST:     TCCTTCTTAGATTATCACTCCATGATCCTGTACTTTCCCTTAACATTGAG                         GCACCTAGTAATGACGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCT
genomic: TCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccc ... gttactgtagGCACCTAGTAATGACGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCT
EST: gi|57575221|gb|CX548196.1|CX548196
EST:     TCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAG                         GCACCTAGTAATGACGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCT
genomic: TCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccc ... gttactgtagGCACCTAGTAATGACGATGCTGTGAAGCTTGGACTTGCTGTGCTTGCAGCT