1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGgtaggagttgtttgtactactacttggattagaacaagaatattttataactactctgaatttgtgttttaataacaaaaattcatctaagcaatatactgacacatctcacataagcctaaaactattttgctgatatcttatcttcttgttccattaatatggttccctacttacttcttgtttcag
species | Glycine max |
transcript | GLYMA10G04300.2 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAG TTACAAGCCTTCCCTGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGAEST: gi|214004496|gb|DB985080.1|DB985080
genomic: GGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGgtaggagttg ... cttgtttcagTTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGA
EST: TCCATCCATAG TTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGAEST: gi|120493576|gb|EH221743.1|EH221743
genomic: TCCATCCATAGgtaggagttg ... cttgtttcagTTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGA
EST: GGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAG TTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGAEST: gi|31458556|gb|CD400584.1|CD400584
genomic: GGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGgtaggagttg ... cttgtttcagTTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGA
EST: GGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAG TTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGAEST: gi|31472073|gb|CD414101.1|CD414101
genomic: GGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGgtaggagttg ... cttgtttcagTTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGA
EST: GTTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAG TTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGA
genomic: GGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGgtaggagttg ... cttgtttcagTTACAAGCCTTCCCCGTTTTTTATATTGGACGAAGTTGATGCTGCGTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGgtaggagttgtttgtactactacttggattagaacaagaatattttataactactctgaatttgtgttttaataacaaaaattcatctaagcaatatactgacacatctcacataagcctaaaactattttgctgatatcttatcttcttgttccattaatatggttccctacttacttcttgtttcag
- - - - - - - - - - - - - - - - - - - - - - TGCTGC