Sequence
atgc intronic sequence ATGC exonic sequenceCTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATgtacttctctctactgtttaatatttttcattttattctcaaattattgtcagaatattaatgttagggaatcttttgatgcag
Basic information
species | Glycine max |
transcript | GLYMA09G41510.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 18
CTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATgtacttctctctactgtttaatatttttcattttattctcaaattattgtcagaatattaatgttagggaatcttttgatgcag------------------------------
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------------------------------------AAAGGAATTTCAAATCTCTGCCTTGTCAATGAACTTGATGACTCTCTGCTACTTGTTGCCTCTTGTAATGTTC-CAACTCTTTCCAGAGCGTC-TTTTGCAAgttagttattgattgagtatggctgttaaaagctcttact-tgtggttctgaaatctcatgtaggcgatggatcag
upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 18
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 18
CTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATgtacttctctctactgtttaatatttttcattttattctcaaattattgtcagaatattaatgttagggaatctt-ttgatgcag--------------------------
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CTTCTCAATGGCTTTGACAATCATGATTTTCCTGACAAAGGAATTTCAAAGCTCTGCCTCATCAATGAACTTGACGACTCTCTGCTACTTGTTGCATCATgtaatgttcacaactcttgccaccaagtctttcagatgtttgcaagttgattgaatatgggtgttgagtaatggtatctatgtcttacacatgcttttgggatttgggtag
upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 18
CTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATgtacttctc---tctactgttta-atatttttcattttattctcaaatta-ttgtcagaatattaa--tgttagggaatct---tttgatgcag--------------
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CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15201009|gb|BI424645.1|BI424645EST: GCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCAT CTGATGGAAACATTCGGATTTGGAAAGATTATACTCTGAGGGGTAAACAAA
genomic: GCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATgtacttctct ... tttgatgcagCTGATGGAAACATTCGGATTTGGAAAGATTATACTCTGAGGGGTAAACAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATgtacttctctctactgtttaatatttttcattttattctcaaattattgtcagaatattaatgttagggaatcttttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT