Sequence
atgc intronic sequence ATGC exonic sequenceGTTTCACTTGTTAGTAAAGACTCCTCCATGTTGGATGGGCTTGACAATGCCAGTATTGAAATGGAAGAAGCCAAGgtttgtagtgtgtacagtgatttatgttgtccttgttctatattatagtcattgcagtagtgatgaaaattgaaaatggattctgttcaatgtcaaagac...
Basic information
species | Glycine max |
transcript | GLYMA09G37610.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G37610.1 (Glycine max), 5'ss of exon 18
lower sequence: AT5G15070.2 (Arabidopsis thaliana), 5'ss of exon 21
GTTTCACTTGTTAGTAAAGACTCCTCCATGTTGGATGGGCTTGACAATGCCAGTATTGAAATGGAAGAAGCCAAGgtttgtag---tgtgtacagtgattt-atgttgtccttgttctatattatagtcattgcagtagtgatgaaaattgaaaatggattctgttcaat-gtcaaagac
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GTTTCTCTGGTAAGTAAGGACTCTTCCATGTTGGATGGCCTTGATAATGCCAGCAGTGAAATGGAAGCAGCTAAGgtttgtctctctctttactacatcttgattgtggcttcagcagatatgagacgaatgaaaggatgtttaggtgctatttagaagcatcaaccaatagtca-----
upper sequence: GLYMA09G37610.1 (Glycine max), 5'ss of exon 18
lower sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 21
GTTTCACTTGTTAGTAAAGACTCCTCCATGTTGGATGGGCTTGACAATGCCAGTATTGAAATGGAAGAAGCCAAGgtttgtag-tgtgtacagtgatttatgttgtccttgttc---tatattatagtcattgcagtagtgatgaaaattgaaaatggattctgttcaatgtcaaagac-------------------------------------------------------------------------
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GTTTCTTTGGTTAGCAAGGACTCTTCCATGTTGGATGGTCTTGATAATGCCAGCATTGAAATGGAAGCGGCCAAGgtttttccctctgtttgatatgtcattttattgtgtatcagtcacgttttggtcaacaagatcgaaactgtttctgaaagaccgtactatct--tctcaaaggaaataagtactcttctcaaatattttttgtaataattttaacagttttgatttctctaatttctttccctgcag
upper sequence: GLYMA09G37610.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 20
GTTTCACTTGTTAGTAAAGACTCCTCCATGTTGGATGGGCTTGACAATGCCAGTATTGAAATGGAAGAAGCCAAGgtttgtagtgtgta--cagtgatttatgttgtccttgttctatattatagtcattgcagtagtgatgaaaattgaaaatggattctgttcaatgtcaaagac----
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GTTTCCCTTGTTAGCAAGGACTCATCTATGTTGGATGGACTTGACAATGCCAGTATTGAGATGGAAGAAGCTAAGgtttatcttctttcttcaccgtcttctgc-atggtggttttgcatttta--tattgccaaatt---caaaattcttatttgatcaccctaagtttcctccatgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120531780|gb|EH259913.1|EH259913EST: CCATGTTGGATGGGCTTGACAATGCCAGTATTGAAATGGAAGAAGCCAAG GCTCGGCTAAATGAAATCATAACCTCTAGTTCAAAGACAATCCATAACAAT
genomic: CCATGTTGGATGGGCTTGACAATGCCAGTATTGAAATGGAAGAAGCCAAGgtttgtagtg ... tattctgcagGCTCGGCTAAATGAAATCATAACCTCTAGTTCAAAGACAATCCATAACAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTCACTTGTTAGTAAAGACTCCTCCATGTTGGATGGGCTTGACAATGCCAGTATTGAAATGGAAGAAGCCAAGgtttgtagtgtgtacagtgatttatgttgtccttgttctatattatagtcattgcagtagtgatgaaaattgaaaatggattctgttcaatgtcaaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC