Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaagaaaagtccatgtaatcattggcatctaggttcaagttact...

Basic information

species Glycine max
transcript GLYMA08G23990.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaatcag-gcagtttttggtgttttatttatattagaaaaaagaagaaaagtccatgtaatcattggcatctaggttc----aagttact
||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||| | |  || ||||||||||||      | ||| |  |     |   |  |   ||  | |  |  ||| |  |   ||| ||  |  || | |   |||   | |          |   |  |
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgta----aatctaacgtgtttttaccactcctttcgtcct-tgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgtt

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 17
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatgg----tggtgtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaagaaaagtccatgtaatcattggcatctaggttcaagttact--
|||||| || |  ||||| |||||||| |||||||||||||||||||||||||| |||||| |||  |||||||  ||||||       | ||   ||||||  |  | |||      |||| |||| |    ||  ||    |   | | |   ||||||  ||    |  ||| | | | |  
ATATGATAAGTATTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACATTATTCATTTCAACACATTGGCAACCCAGgtaaattctcttgttccaggaattcgataatttgcca-attttctttaga---aaaccaatcctagctgactagaaaatcat--gccaaaactttccaataattgt

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 17
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaatcaggcagtttttggtgttttatttat-attagaaaaaagaagaaaagtccatgtaatcattggcatctaggttcaagttact
|||||| || |||||||| |||||||| || ||||||||||||||||||||||| || ||| |||  ||||||||||||||| |||  | ||| |       |  | ||| ||     ||  || || | ||   |           | ||  |||||||   | |    ||||| |   
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACATTATTCACTTCAACACATTGGCAAATCAGgtaaggtctt-taatgcccacccccctgttttgtaaccaatcaattatcacaatttattgttgctccacctgctatcattgtattgttttgtcaagatttg

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggt----ggtgtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaa-gaaaagtccatgtaatcattggcatctaggttcaagttact
|||||| || |||||||| |||||||| || ||||||||||||||||| ||||| || ||| |||  ||||||||||||||| | |      |   || | |   | | ||||||      | ||| |  |  | |       | || |  || | || | |    ||  |  |||   ||   
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaactt----attaaacttctgattgt-

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G128877_T04 (Zea mays), 5'ss of exon 1
---------------------ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggt----ggtgtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaa-gaaaagtccatgtaatcattggcatctaggttcaagttact
                     |||||| || |||||||| |||||||| || ||||||||||||||||| ||||| || ||| |||  ||||||||||||||| | |      |   || | |   | | ||||||      | ||| |  |  | |       | || |  || | || | |    ||  |  |||   ||   
ACAAGTGTTGTTTAATATTAGATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaactt----attaaacttctgattgt-

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 18
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaagaaaagtccatgtaatcattggcatctaggttcaagt-tact-
||||||||||||||| || ||||||||||| || ||||||||||| ||||||||||||||||||||  | || || ||||||   |    | || | | |  ||   |    || |   |    |||| |    |   |    ||| | ||||  |        | | ||    |  ||  
ATATGACAAATTCTGTCCTTTCTACAAGTCCGTGTGGATGATGCGTAACATTATCCATTTCTACAACCTAGCCAACCAGgta-aataagatgag-atttatacatact---atgctaagtggggatta-aggtcaattggtttgtctaggtaaaaacccattaattgttttggatacacag

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 18
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaat------caggcagtttttggtgttttatttatattagaaaaaagaagaaaagtccatgtaatcattggcatctaggttcaagttact
||||||||| || || ||||| |||||||| |||||||||||| | |||||||| |||||||| |||||||| |||||||||   |  | |      |      | |  | ||  |     | ||||  |  |        ||   ||||   || | ||       ||  |     ||      
ATATGACAAGTTTTGTCCCTTTTACAAGTCAGTTTGGATGATGAGGAACATTATTCATTTCTATAATTTGGCCAATCAGgtactcttatttttccctttctttcctgatatttcctctctatgtattcttcatttttttctgactcaaagggtatctgattggacaaatgaaaagaaaa------

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 18
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaagaaaagtccat-gtaatcattggcatctaggttcaagttact---
|||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| | || |        ||   |  |||                 ||                  | || ||  ||||      | || |    ||  ||   
ATATGATAAGTTCTGCCCCTTCTACAAGTCGGTTTGGATGATGCGCAATATTATCCATTTCTATAATTTGGCCAATCAGgtacgatgttcctc----tctctctctttccaccccccctcccccgttttcctttttctctttgacctattgttgtcatgtttgccaagatcattgtgtctgta

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 5'ss of exon 18
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt------gtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaagaaa--agtccatgtaatcattgg--catctaggttcaagttact-------------------------------------------------------------------
 ||||||||||||||||| |||||||||||||| ||||||||||| || ||| |||| ||| ||| | | ||||||||||| || | ||        || |  |  |    || ||  | ||||  |  | ||     ||   |   |  | |   |  |||| |||     |  |  ||    | | |                                                                   
TTATGACAAATTCTGCCCATTCTACAAGTCTGTGTGGATGATGCGTAATATTGTCCACTTCAACACTCTTGCAAATCAGgtttgctcgttattccaaaatgtttttgtttattatttatcttttcctcctcttttttgaattgattcattaatttgttaaatctttgagttgttcaaattttgatgattgggtggttgtatctcaactcgtatgtttacaaattccaaaactaatgagcgatgatttcatctgcag

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
lower sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 18
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaatcaggca-gtttttggtgttttatttatattagaaaaaagaagaaaagtccatgtaatcattggcatctaggttcaagttact
||| || || || || || ||||||||||| |||||||||||||| |||||  ||||||||| | |  || | | |||||||||    ||  |    ||   || ||  |||   ||||| ||    | | |                                                
ATACGATAAGTTTTGTCCGTTCTACAAGTCCGTTTGGATGATGCGAAACATCGTCCATTTCTGCGACCTGTCCACTCAGgtatg-cactgccatacctctttcacgtccttgaaattttactttctcttgcag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182032|gb|HO026207.1|HO026207
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|192305531|gb|FG998315.1|FG998315
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|57575332|gb|CX548307.1|CX548307
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|7639458|gb|AW733780.1|AW733780
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|13787440|gb|BG650032.1|BG650032
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|58024853|gb|CX711594.1|CX711594
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|151395287|gb|EV265158.1|EV265158
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|192324960|gb|FK015411.1|FK015411
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|7638913|gb|AW733179.1|AW733179
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|21676820|gb|BQ629171.1|BQ629171
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|207828554|gb|GD800455.1|GD800455
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAAGAAAGATATCTTACAC
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCA-GAA-GATATCTTACAC
EST: gi|12691488|gb|BG157824.1|BG157824
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|7042485|gb|AW472379.1|AW472379
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|209722704|gb|BW657958.1|BW657958
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|6951864|gb|AW423932.1|AW423932
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|58023444|gb|CX710185.1|CX710185
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|9204331|gb|BE330563.1|BE330563
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|6724341|gb|AW308740.1|AW308740
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|31561919|gb|CD487757.1|CD487757
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|254333422|gb|GR841284.1|GR841284
EST:     CCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCC-T
EST: gi|192309104|gb|FG999387.1|FG999387
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|9900935|gb|BE609903.1|BE609903
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|192309103|gb|FG999386.1|FG999386
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|11274141|gb|BF324509.1|BF324509
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|298166861|gb|HO010300.1|HO010300
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|193417781|gb|FK383375.1|FK383375
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
EST: gi|57575633|gb|CX548608.1|CX548608
EST:     CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAG                         GCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT
genomic: CTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggt ... acatgtgcagGCAGTAGAGAGGGGAGCTGGTTCAGATGGTCAGAAGATATCTTACACCCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaagaaaagtccatgtaatcattggcatctaggttcaagttact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaaa