Sequence
atgc intronic sequence ATGC exonic sequenceGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACCGACCCTGACTATAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAGgtaagttcatatgttcctgcaaggatatattattttacttgtgaaatttaataacactgctatttaattttctgcatttctaatttgcacgagtttgatttgagtttatattgtgagcaatgttcattgttcttttgcag
Basic information
species | Glycine max |
transcript | GLYMA08G22140.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 18
GGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACCGACCCTGACTATAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAGgtaag----ttcatatgttcctgcaaggatatattattttacttgtgaaatttaataacactgctatttaatt--ttctgcatttctaatttgcacgagtttgatttgagtttatattgtgagcaatgttcattgttcttttgcag
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GGAAGCTCGAGGTATGCTGGAGGATGCACTGGAAGTTGCCACAGATCCTGACTATAGATTTGATCTAGCTATACAGCTAGGCAGACTAGGTACTGCAAAGgtaagaatttttatttatctttagttaggtgtataaaccttcaattggcatttaacacctatgtaagtgagtgagttcatcaaaatcaactcttttcttataattgtttgtttccattatgaaagatgtttcttctcttcttgcag
upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 18
GGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACCGACCCTGACTATAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAGgtaagtt--------catatgttcctgcaaggatatattattttacttgtgaaatttaataacactgctatttaattttctgcatttctaatttgcacgagt--ttgatt---tgagtttatattgtgagcaatgttcattgttcttttgcag------
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GGAATCACGGGGTATGATAGAGGATGCCCTGGAAGTAGCTACTGACCCTGATTACCGATTTGAGCTAGCAATGCAGCTTGGCAGATTAGAGGTTGCAAAGgtaaattatgttgattttatgtcagtatagggatataaactagttctttgacagtttgttgacttgaacatttaagcacatctttattttcttctgaggaatgattagtcctctgtgacaattttatctgaaatatagcatgatcttctttgctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151411223|gb|EV281034.1|EV281034EST: ACTATAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAG GGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAA
genomic: ACTATAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAGgtaagttcat ... tcttttgcagGGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACCGACCCTGACTATAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAGgtaagttcatatgttcctgcaaggatatattattttacttgtgaaatttaataacactgctatttaattttctgcatttctaatttgcacgagtttgatttgagtttatattgtgagcaatgttcattgttcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA