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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACATCACGGACACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCAATTTCCTTGTTAATCTACAAGgtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattgttcttttattgatag

Basic information

species Glycine max
transcript GLYMA08G13680.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 18
lower sequence: GRMZM2G430027_T01 (Zea mays), 5'ss of exon 6
TGGACATCACGGACACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCAATTTCCTTGTTAATCTACAAGgtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgcttagtgtt-ttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattgttcttttattgatag
||| || || || ||||| || ||  | ||    |||||  | || || || ||||| ||||| |||||||||||||||||||||||| |  | || |||||   |       | ||       | | ||   ||   ||   |||  | | ||   || || ||       || ||||    ||  || || |||   |   |  |||| |                                      
TGGCCACCATGGGCACATACTTGCCTTGTACACTCAAACACGTGGTGACTTCATTGTGGTTGGCGATCTGATGAAGTCAATTTCCTTGCTGGTGTATAAGgtgggtgacgggttttttaactgtttgcttgactcacattgcattatctgtaaa--attattgtgtccgtctttgttgggctgattgctaatgttt---tccctgttgagcag-------------------------------------

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 18
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 5'ss of exon 18
TGGACATCACGGACACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCAATTTCCTTGTTAATCTACAAGgtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattgttcttttattgatag
 ||||||||||||||||| ||||| || |||||||| ||  | ||||| ||||| || ||||||||||| ||||| ||||| ||||| ||  | ||||||||| |  ||  |       |||   | ||| ||| |        | |  | | | ||||| | || | | |||||  ||||     || ||| ||| || || ||                                            
CGGACATCACGGACACATTCTAGCTCTCTATGTGCAGACCCGTGGAGACTTTATAGTTGTTGGTGATCTCATGAAATCAATCTCCTTATTGCTATACAAGgtataacttcta-------gacga-aatttgtgtgtttaaaaactgatctacta-tgttcatttggt-attgtttctgatgg----cttattcttgaatgtaaaag-------------------------------------------

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 18
TGGACATCACGGACACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCAATTTCCTTGTTAATCTACAAGgtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattgttcttttattgatag----
|||||| || |||||||| || || || ||||| |||||  | |||||||| ||||| ||||||||||||||||| ||||| || |||||||| || |||||||  |    |||  | |   | || |  || | |  |||||  |     ||| | |     | | | | |||    | || |      ||| | | | ||   | |     || ||   | |||    |||| || ||| || ||      
TGGACACCATGGACACATTCTTGCCCTCTATGTACAAACACGGGGAGATTTCATTGTTGTTGGTGATCTGATGAAATCAATCTCTTTGTTAATTTATAAGgtaagat---gactaatcttcaagtaatccct-tgtccttttggcag----caagtatggcgttccctggagtt--aaaagagtgttgtgtttgtttgt-tactcttatcgtcttgttaatggatgtctgattggtcctttttttattttcag

upper sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 18
lower sequence: PP1S203_55V6.1 (Physcomitrella patens), 5'ss of exon 18
TGGACATCACGGACACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCAATTTCCTTGTTAATCTACAAGgtaaattttaaactgttgtgacactagtttctgtctggttttgttaaatttcaactgttcttctgctta---gtgttttggatgaat---aactgatttttgtatatat-aatgagtacattcttttggaatgataaattgttcttttattgatag----------------------------
|   || || || || ||  | ||| | ||||| ||| |  ||||||||||||| || || || ||||||||||||||||||||  |  | || ||||||||   |  |  ||   | ||    |  | ||    |    || ||| |||||| |  ||   |    ||   ||  ||||  |   |    | || |||   | | | | ||| |||  |     |  |||  |  | | | |  |||| || | |                            
TTCCCACCATGGGCATATATTGGCATTGTATGTTCAATCACGAGGAGATTTTATCGTTGTGGGAGATCTGATGAAGTCAATTTCGCTTCTCATTTACAAGgtttgtagtttacaaat-tgctgattttatcaccataagattattacatttcatccttttaccctggtatgggttctttgcttccgtcttgattgctttccatcttttttaatcagttgaagaggtaagaagtaatagtaggttgtttaatgcttgaagaaatgacctgcattgagtccggcag