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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTTCCTGCATGGCTAAACTGTTTGCCAATCAAAGGTGATTTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggtcctaccctgcttttctcaatcttctgatatgttcatgctgtcatgcatatcttttccactgtactaattgtctgtttatctgcacag

Basic information

species Glycine max
transcript GLYMA08G12120.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12120.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 18
GTAGTTCCTGCATGGCTAAACTGTTTGCCAATCAAAGGTGATTTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggtccta-----ccctgcttttct----caatcttctgatatgttc---atgctgtcatgcatatcttttccactgtactaattgtctgtttatctgcacag-----------
|| |||||||| ||| | |  || |||||||| || ||||||||||| |||||||||||||| ||||| |||||||||||||||| ||| | || |||  |   |        | ||||| |    | ||  ||  || ||||    ||| |||  |  || |       ||   | |||      |  | |||                 
GTTGTTCCTGCCTGGTTGAGTTGCTTGCCAATAAAGGGTGATTTGATCGAGGCCAAAGTTGTTCATGACCAACTTTGTTCAATGGTTGAAATgtaaggacttaaaaagttttttacttttatgcatccattctcctatctgtttcctatggtgtggtatatctaccccatacaagattaagctgaggcatgtctttttcatttatctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193526131|gb|FK480656.1|FK480656
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         ATCTGACAGTGAGCTGTT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggtc ... atctgcacagATCTGACAGTGAGCTGTT