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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGgttggttggttagttgaattccgtgcattaagattataggaattgtcttgacttcttttgattctgtctaattttgagaattttgctcatatcacaaatc...

Basic information

species Glycine max
transcript GLYMA07G40230.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 13
GTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGgttggttggttagttgaattccgtgcattaagattataggaattgtcttgacttcttttgattctgtctaattttgagaattttgctcatatcacaaatc---
 || || ||||| |||  |||  |    ||| | || ||||||||||| || ||||||||| ||||||| ||||| |||||  ||||||| || || |||||  | |    | |  |  |      |   | |  || |  | | || | | ||  ||   | ||    |    |     ||||  |  || ||||| |    
ATCCACGTTTGGTGATGGTCTCCAAAGGGAACTGCCGGCATGCCTTCCCGTTCTTGTTGATAGAATGGGTAATGAAATAACTAGACTTACAGCAGTTAAGgtaagctaccgactgcacctttactgacagatagcattgctaatctcctta-ttgattcattacttatgagcactacttgttttctt--taacacaattatgt

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 18
lower sequence: AT2G02560.1 (Arabidopsis thaliana), 5'ss of exon 17
GTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGgttggt--tgg---ttagttgaattccgtgcattaagattataggaattgtcttgacttcttttgattctgtctaattttgagaattttgctcatatcacaaatc
 ||||||||||| ||||| || |  ||||| |||||| |||||||||||||||||||||||||||||||||| || || || || || ||||| || ||||||| |  |||   |  ||||||     |   |||| ||| |     ||  ||  | |   | ||||| |||     | ||                        
TTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAACGAAATCACTCGCCTCACTGCAGTAAAGgttgttcttgggcttctgttgaagcttttattttaaaattgt---ttttagctcaagtc--tctgattgtgtgggtgtatgcag---------------------

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 18
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 18
GTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGgttggttggttagttgaatt-ccgtgcattaagattataggaattgtctt--gacttcttttgattctgtctaattttgaga--attttgctcatatcacaaatc
 ||||||||||| ||| | || |  |||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||  |   |  | |  || |  |||    || ||||   ||| ||  |  ||    |  | || | ||  |  || |      |  |||| |||      
TTCAACATTTGGTGATAACCTCAGAGCAGAATTACCTGCATGCCTTCCTGTACTTGTTGACCGGATGGGAAATGAGATAACTCGACTTACTGCTGTAAAGgttggtttttgcatctattgaccatatatt----ttttagggcctgtttttggggttgacattttcctttttagatcagaaacagacatattcatttcattgga-