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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAGgtattaaaaacaaactgattacatttatttgatcatgtactttaacataaggtttagtatcaagtttcatcccatgtccttggtcacag

Basic information

species Glycine max
transcript GLYMA07G01860.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 7
CTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAGgtattaaaaacaaactgattacatttatttgatcatgtactttaacataaggtttagtatcaagtttcatcccatgtccttggtcacag
||  |  ||||||| ||||||||||||||||| || ||||||||  | || ||||| |||||||||||  | |||||||||||||||    |         |   || |  ||| |  | |           | ||  ||  |||   |  || |     |  ||  ||||||
CTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGTCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctcattttcctgaaacccagtcttttcaaaaggag-----gagaatggacta--atctgatcccaccattgttattttatcacag

upper sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 16
CTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAGgtattaaaaacaaactgattacatttatttgatcatgtactttaacataaggtttagtatcaagtttcatcccatgtccttggtcacag
||  |  ||||||| ||||||||||||||||| || ||||||||  | |||||||| |||||||||||  | |||||||||||||||    |         |   || |  ||| |  | |           | ||  ||  |||   |  || |     |  ||  || |||
CTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctcattttcctgaaacccagtcttttcaaaaggag-----gagaatggacta--atctgatcccaccattgttattttatcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14009025|gb|BG725629.1|BG725629
EST:     GAATACTTTGAG                         GCAATTCCAGGGGTTCCAAAAATTAAAGAGATGTACAACCCAGCAACATGG
genomic: GAATACTTTGAGgtattaaaaa ... ttggtcacagGCAATTCCAGGGGTTCCAAAAATTAAAGAGATGTACAACCCAGCAACATGG