Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTAGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCGTAAGgtgaatttgtctatgatccttctgttcacagttactagttttttaaagttgtgttaattttcaaaattaacaggcacagatatgtttacaatataagcca...

Basic information

species Glycine max
transcript GLYMA06G46940.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 18
lower sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 18
GTTCTTAGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCGTAAGgtgaatttgtctatgatccttctgttcacagttactagttttttaaagttgtgttaattttcaaaattaacaggcacagata------tgtttacaatataagcca-------------
  |  ||  ||| ||| ||| | ||  |||||| |||||| || ||||||||  ||||||||| |||||| |||||||||||||||||||||||   |||||||||      |  ||  |||   |       | || | ||  || |   | |||  ||    |||    | | | | ||       || | ||| | |  ||               
ACTTCTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTTCAACCAGGAACTCCAGCCATTTCAATTAAGAATGGATACTTTTCATGGGATTCAAAGgtgaatc--ctcaaaatatttcctcttgtttacatta-tgttggaatgcaatattagcttctgcaat-gctaagtatacatgacattctgatcacagtgtttgctcgaatatttcccag

upper sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 18
lower sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 16
GTTCTTAGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCGTAAGgtgaatttgtctatgatccttctgttcacagttactagttttttaaagttgtgttaattttcaaaatta-acaggcacagatatgtttacaatataagcca-------------
  | |||  ||| ||| ||| | ||  |||||| |||||| |  ||||||||  ||||||||| || ||| |||||||||| ||||||||||||   |||||||||      |  |||| |||        |||    | ||   | |   | ||| |||    ||||  |||        | || | |   | |  ||               
ACTTTTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTCCAACCAGGAGCTCCAGCCATTTCCATTAAGAATGGATATTTTTCATGGGATTCAAAGgtgaatcctcaaaatatccctcttgcttagatta----tgttgagacgcaatattagtttatgcaattgtacacatgacattctgatcatggtgtttgctcgaatattttccag

upper sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv10s0003g04450.t01 (Vitis vinifera), 5'ss of exon 5
---GTTCTTAGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCGTAAGgtgaatttgtctatgatccttctgttcacagttactagttttttaaagttgtgttaattttcaaaattaacaggc-acagatatgttt-acaatataa-gcca--
   | |  || |||| ||||||| | |   || |||||||||| |||||||||| |||||||| ||||||||  || ||||||||||||| |||||    ||||| || || |  ||| |  ||   ||     | |      |||||      | || | ||| ||  | | |       |||| ||| | |||   |||  |||  
ACTGCTTCTAACTGAAGAGCGAATTCTTGTACCAAATCCACCTTTTGAACCAGGGCTTCCAGCTATCTCAATCAAGGATGGATACTTTTCTTGGGA---AAAGgtcaaatt-ttcatgtttgtttctttttttatgaaatacgtttta----ctttttgacttttaaggtcagctccttgtagatttgtctcacatcttaacaccatt

upper sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 17
GTTCTTAGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCGTAAGgtgaatttgtctatgatccttctgttcacagttactagttttttaaagttgtgttaattttcaaaattaacaggcacagatatgtttacaatataagcca-----
||||||| |||| ||| ||  | |   || ||||||| || ||||||||||||||||||||||||||||  || ||||||||||||| ||||||   |||||  | || |  ||  |  ||   |||    || |   | || |    || | ||  || | |  |   |||      |   |||||    | |  ||       
GTTCTTAACTGAAGAGAGAGTTCTTGCACCAAATCCAACTCTTGAACCAGGACTTCCAGCCATCTCAATCAAGGATGGATACTTTTCTTGGGATTCAAAGgtctaatt-ttcatatttatttatttctttttttcctttcttct----ttttcttttttattacgaaacacatcttaggtggtgtttgtttttttggctttttgc