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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGgtaaggttttttggcttctgccatctgctagactttgtgcttgtcactattttaaggatatccatgtgcaagagtctaaggcatatgtattcaattagga...

Basic information

species Glycine max
transcript GLYMA06G23920.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G23920.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 18
GTAACATTTGTTATTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGATGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGgtaaggttttttggcttctgccatctgctagactttgtgcttgtcactattttaaggatatccatgtgcaagagtctaa---ggcatatgtattcaattagga-----------------------
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GTGACATTTGTTGTCGTCCAAAAACGGCACCACACTAGACTCTTTGCAAGCAACCACAATGACAAAAGCAGCACTGATAGGAGTGGGAACATCTTACCTGgtaatattttcttacttataattttatttagattatgtcttgatggttgagcttgatccgttgatcaaacaatctccactctagaatagcaatacggttgttacaagcatgaagttcctattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208092068|gb|GD890967.1|GD890967
EST:     CAATCATGATGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTG                         GTACTGTGGTAGATTCTAAGATCTGTCATCCTTCGGAATTCGACTTCTACT
genomic: CAATCATGATGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGgtaaggtttt ... tgtaatgcagGTACTGTGGTAGATTCTAAGATCTGTCATCCTTCGGAATTCGACTTCTACT