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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTTCTGTCTCAAGTCTCTGACCTAAACCTAAGGCATACTTTACAATTTGGCATTGGATTACATCATGCAGGCCTGAATGACAAAGACAGATCTCTGgttgaggaactttttgcaaacaacaaaattcaggcatacatttgttaccatagaaattgaaattggctcttttctttcttttaaagaaaaaaaaattaaaattatatttattttagcttgcccttaactggttagttgtatgatattgatgcag

Basic information

species Glycine max
transcript GLYMA06G21970.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G21970.1 (Glycine max), 5'ss of exon 18
lower sequence: LOC_Os03g11470.1 (Oryza sativa), 5'ss of exon 16
GATGGTTCTGTCTCAAGTCTCTGACCTAAACCTAAGGCATACTTTACAATTTGGCATTGGATTACATCATGCAGGCCTGAATGACAAAGACAGATCTCTGgttgaggaactttttgcaaacaacaaaattcaggcatacatttgttaccatagaaattgaaattggctcttttctttcttttaaagaaaaaaaaattaaaattatatttattttagcttgc--ccttaactggttagttgtatgatattgatgcag--------------------------------
                                  || |||||| | |||||||| || ||  | ||||||||||| || ||||| | ||| |||||  |||| |||||||| ||| |||||||||| |||||||  |   |    |    |||   ||    ||  || |   | | || ||    | |   || | || |||||    ||||   |||||  ||  | ||  |||  |   ||    | ||  |                                 
---------------------------------GAGACATACTCTGCAATTTGGAATAGGTCTGCATCATGCAGGTCTAAATGATAGAGATAGATCCTTGGTCGAGGAACTCTTTTCAAACAACAAGATTCAGgtttgtttggcgtcaagtagtgttttttttttcctgtaaacatgctattctttacatttaagt-aagattattgcgatttct-cttgcaacccaagctaattacatacctgg-gctaatttaaacatcatttcttgttgcttgatgtttttccag

upper sequence: GLYMA06G21970.1 (Glycine max), 5'ss of exon 18
lower sequence: Vv17s0000g07230.t01 (Vitis vinifera), 5'ss of exon 23
GATGGTTCTGTCTCAAGTCTCTGACCTAAACCTAAGGCATACTTTACAATTTGGCATTGGATTACATCATGCAGGCCTGAATGACAAAGACAGATCTCTGgttgaggaactttttgcaaacaacaaaattcaggcatacatttgttacca---tagaaattgaaattggctcttttctttcttttaaagaaaaaaaaattaaaattatatttattttagcttgcccttaactggttagttgtatgatattgatgcag
                                 |||||| || || ||||||||||||||  |||| ||||||||  | ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||       |||| |||     || ||||   ||| |       |   | ||   | ||||  ||  ||   |   | | ||||||  ||| |      |  | |  | ||| ||||||||    
---------------------------------AAGGCACACCTTGCAATTTGGCATTGGGCTACACCATGCAGGATTAAATGACAAAGACAGATCTCTGGTTGAGGAGCTTTTTTCAAACAACAAGATTCAGgttcttccttgtcacctgttcagtaatttttatttggagaagacaaacctt---aaaaaatgaaggtatgttctcactcatttta--ttgactaggcattttcacctctat-atattgatag--