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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCAGCAGATGAAGCCGTTTCTCATCGTGTGAGGGGTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAgtaaacctttttatcttctgaaaattgtattagatttccttattcattcttttaacttgaatttaagatttgaactgtgtccccctcctttctttcccttcttttgctaagtttttttttcttgtctcttccctcaaacag

Basic information

species Glycine max
transcript GLYMA06G13330.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105061|gb|BI892801.1|BI892801
EST:     GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGA                         GTAGTACACGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
genomic: GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAgtaaaccttt ... cctcaaacagGTAGTACACGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
EST: gi|207805892|gb|GD777809.1|GD777809
EST:     GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGA                         GTAGTACACGAACCTCAGGCATTTTCTTCTTTCAGAAGAACGCCTATACCA
genomic: GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAgtaaaccttt ... cctcaaacagGTAGTACACGAACCTCAGGCATTTTCTTCTTTCAGA-GAACGCCTATACCA
EST: gi|27808927|gb|CB063349.1|CB063349
EST:     GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGA                         GTAGTACACGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC
genomic: GTCCCTATCATCATCCTTTAGATGCAATAGAGAGTTTAAATACACACAGAgtaaaccttt ... cctcaaacagGTAGTACACGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTATACCAC